Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3 286 3e-72 >seq3 Length=1410883 Score = 286 bits (316), Expect = 3e-72 Identities = 602/886 (68%), Gaps = 19/886 (2%) Strand=Plus/Minus Query 13581 TTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTT 13640 |||||||| ||||| ||||| |||||||| ||||| |||||||| ||| || || ||| Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388 Query 13641 TCCATAAAATCAAATGGATTTATTGACATAA-ACACTTTATCACAACCTAGTTCTAATAG 13699 ||||| |||||||| |||||| | |||| |||| || || ||| | | | || Sbjct 929387 TCCATGAAATCAAAAGGATTTGTA-ACATTGTACACCTTTTCGTTACCCAAAGCAACTAA 929329 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 ||||||||| |||| ||| || | ||||||| |||| || | ||||||||| | | Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 ||||| | | || ||| |||||||| ||||| || | || || || | ||||| Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209 Query 13820 AATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | || ||| || | || | || | ||| || | ||| || ||||| Sbjct 929208 CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAA 929149 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 ||| ||| | || |||||||| | ||| | |||||| || ||||| | |||||||| Sbjct 929148 GTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCAT 929089 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || |||| || || ||||| || || | |||||||| || ||||| || ||||| Sbjct 929088 CATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTC 929029 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT-ATCCATT 14058 ||| ||||| || || | | ||||| || || |||| | || | || | |||||| Sbjct 929028 AACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCAT-CGTTGATCCATC 928970 Query 14059 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCAATAGCATTAAATAAA 14117 | |||||| |||| || || || ||| | | | |||| ||||| |||||||| ||| Sbjct 928969 TCAAAGCCCAGTCAGCCTTCTTCTTGATACA-TGGAATGTTGTCAATTGCATTAAACAAA 928911 Query 14118 TATTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 | || |||||| | | ||||| || | |||||||| | ||| || |||| | Sbjct 928910 AAGTCAGCCTCTTTTGGATCCTTGATAT--AGGTATCAATCAATAAAGAGTAGGTTTCTG 928853 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 |||| || || ||||| || ||||| |||||||||||| | ||||| | ||| | Sbjct 928852 AGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAA 928793 Query 14236 CTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAA 14295 |||| | | || | || |||| || || || || ||||||||| || ||||| | Sbjct 928792 CTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGA 928733 Query 14296 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG----TTGAGTTTT--TTCCAAT 14349 | || || || || ||| || | | ||||||| || | || | ||||| | Sbjct 928732 AAGCTAAGATTCTTGAAATGAAAAA---CCTTTCATTGTCATTTAACTTGTCCTTCCAGT 928676 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | || |||||| | || | ||| ||| | |||||||| ||| ||||||||| Sbjct 928675 CATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTT 928616 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 | |||||| ||| ||||| | |||| || ||||| | ||||| Sbjct 928615 TGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727946030600