Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq3 293 2e-74
>seq3
Length=1410883
Score = 293 bits (324), Expect = 2e-74
Identities = 604/887 (68%), Gaps = 21/887 (2%)
Strand=Plus/Minus
Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428
|||||||| ||||| ||||| |||||||||||||| |||||||| ||| || || |||
Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388
Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487
||||| ||||| || |||||||| |||| |||| || || ||| | | | |||
Sbjct 929387 TCCATGAAATCAAAAGGATTTGTA-ACATTGTACACCTTTTCGTTACCCAAAGCAACTAA 929329
Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547
||||||||| |||| ||| || | ||||||| |||| || | ||||||||| | |
Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269
Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607
||||| | | || || |||||||| ||||| || | || || ||| | |||||
Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209
Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667
||| || ||| || | || | || | ||| || | ||| || |||||
Sbjct 929208 CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAA 929149
Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727
||| ||| | || |||||||| | ||| | |||||| || ||||| | ||||||||
Sbjct 929148 GTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCAT 929089
Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787
|| |||| || || ||||| || || | || ||||| || ||||| || |||||
Sbjct 929088 CATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTC 929029
Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT--TTGATATCCAT 13845
||| ||||| || || | || ||||| || || |||| | || | ||||| ||||
Sbjct 929028 AACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGAT--CCAT 928971
Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCGATTGCATTGAATAA 13904
| |||||| |||| || || || ||| | | | |||| || |||||||| || ||
Sbjct 928970 CTCAAAGCCCAGTCAGCCTTCTTCTTGATACA-TGGAATGTTGTCAATTGCATTAAACAA 928912
Query 13905 ATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962
| || |||||| | | ||||| || | |||||||| | ||| || ||||
Sbjct 928911 AAAGTCAGCCTCTTTTGGATCCTTGATAT--AGGTATCAATCAATAAAGAGTAGGTTTCT 928854
Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022
||||| || || || || || ||||| |||||||| ||| | ||||||| |||
Sbjct 928853 GAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGA 928794
Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082
|| || | | || | || ||||||| || || |||||||||||| || |||||
Sbjct 928793 ACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAG 928734
Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG----TTGAGTTTT--TTCCAA 14136
|| || || || || ||| || | | ||||||| || | || | |||||
Sbjct 928733 AAAGCTAAGATTCTTGAAATGAAAAA---CCTTTCATTGTCATTTAACTTGTCCTTCCAG 928677
Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196
|| || |||||| | || | ||| ||| | |||||||| ||| ||||||||
Sbjct 928676 TCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTT 928617
Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243
|| |||||| ||| ||||| | |||| || ||||| | |||||
Sbjct 928616 TTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478588746158760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |