Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3 293 2e-74 >seq3 Length=1410883 Score = 293 bits (324), Expect = 2e-74 Identities = 604/887 (68%), Gaps = 21/887 (2%) Strand=Plus/Minus Query 13369 TTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTT 13428 |||||||| ||||| ||||| |||||||||||||| |||||||| ||| || || ||| Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388 Query 13429 TCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATAA 13487 ||||| ||||| || |||||||| |||| |||| || || ||| | | | ||| Sbjct 929387 TCCATGAAATCAAAAGGATTTGTA-ACATTGTACACCTTTTCGTTACCCAAAGCAACTAA 929329 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 ||||||||| |||| ||| || | ||||||| |||| || | ||||||||| | | Sbjct 929328 TAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAA 929269 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 ||||| | | || || |||||||| ||||| || | || || ||| | ||||| Sbjct 929268 AGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAAT 929209 Query 13608 AATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13667 ||| || ||| || | || | || | ||| || | ||| || ||||| Sbjct 929208 CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAA 929149 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 ||| ||| | || |||||||| | ||| | |||||| || ||||| | |||||||| Sbjct 929148 GTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCAT 929089 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 || |||| || || ||||| || || | || ||||| || ||||| || ||||| Sbjct 929088 CATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTC 929029 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT--TTGATATCCAT 13845 ||| ||||| || || | || ||||| || || |||| | || | ||||| |||| Sbjct 929028 AACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGAT--CCAT 928971 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTT-TCGATTGCATTGAATAA 13904 | |||||| |||| || || || ||| | | | |||| || |||||||| || || Sbjct 928970 CTCAAAGCCCAGTCAGCCTTCTTCTTGATACA-TGGAATGTTGTCAATTGCATTAAACAA 928912 Query 13905 ATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 13962 | || |||||| | | ||||| || | |||||||| | ||| || |||| Sbjct 928911 AAAGTCAGCCTCTTTTGGATCCTTGATAT--AGGTATCAATCAATAAAGAGTAGGTTTCT 928854 Query 13963 GAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14022 ||||| || || || || || ||||| |||||||| ||| | ||||||| ||| Sbjct 928853 GAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGA 928794 Query 14023 ACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAA 14082 || || | | || | || ||||||| || || |||||||||||| || ||||| Sbjct 928793 ACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAG 928734 Query 14083 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG----TTGAGTTTT--TTCCAA 14136 || || || || || ||| || | | ||||||| || | || | ||||| Sbjct 928733 AAAGCTAAGATTCTTGAAATGAAAAA---CCTTTCATTGTCATTTAACTTGTCCTTCCAG 928677 Query 14137 TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14196 || || |||||| | || | ||| ||| | |||||||| ||| |||||||| Sbjct 928676 TCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTT 928617 Query 14197 TTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || |||||| ||| ||||| | |||| || ||||| | ||||| Sbjct 928616 TTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588746158760