Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq8 125 5e-24 >seq8 Length=1028784 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || |||||||| | |||| |||||||| | ||||| |||||| Sbjct 326400 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 326341 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| ||||||||||| |||||||| || |||| ||||| || | || Sbjct 326340 AAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGG 326281 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| |||| ||||| || | | || || || ||| || Sbjct 326280 ATACCTTCCTTATCTTGGATCTTACTC-TTGACGTTGTCGATAGTATCAGAAGACTCAAC 326222 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| | ||| || || ||||||||||| Sbjct 326221 TTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 || || |||||||| | |||| |||||||| | |||||| || |||||||| | || Sbjct 326616 CTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCG 326557 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || ||||||||||| || || |||||||| | || || || | || | |||||| || Sbjct 326556 TCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTA 326497 Query 43015 TCGCTGATCA-ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || |||| |||||| ||| || ||| ||||| | ||| || || | || || Sbjct 326496 TCTTGGATCTTACTCTT-GACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAAT 326438 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||||| || | ||| || || || |||||||| Sbjct 326437 AGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || ||||| | ||| |||||||| | ||||| |||||| Sbjct 325716 CCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 325657 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | |||| ||||||||||| || || |||||||||| || || || | || Sbjct 325656 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGA 325597 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| |||| ||||| || | | ||||| | ||||| Sbjct 325596 ATACCTTCCTTATCTTGGATCTTACTC-TTGACGTTGTCGATGGTGTCAGAGGATTCGAC 325538 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| || || |||| ||| || || || ||||||||| Sbjct 325537 CTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369558168522