Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 306 5e-78 >seq3 Length=1410883 Score = 306 bits (338), Expect = 5e-78 Identities = 890/1354 (66%), Gaps = 46/1354 (3%) Strand=Plus/Minus Query 71512 ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAA 71571 || || || || |||| ||||| || || | | | || |||||||||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 71572 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TG 71628 | | |||||||||| |||||||||||| || || ||| | || | || | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 71629 ACTA--TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATC---------TCCCAT 71677 || |||||| | ||| | ||||| ||||| | | | | ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 71678 CTATT---ACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 71734 | | ||||| | ||||| | |||||||| ||||| || || ||||||| | Sbjct 802452 CACTCTCGACAAATGCAGGCAAGGATATAGATGCCAAGTTACATACAGCAACCTCATCTG 802393 Query 71735 CATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 71794 | | | |||| | ||| || || | ||| | || || | || ||||| | Sbjct 802392 GAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATTCT 802333 Query 71795 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 ||| ||| |||| |||||||| ||||| |||||||| || || |||||||| || || Sbjct 802332 TTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTCTG 802273 Query 71855 TCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAT-TCTTGTATCT 71912 | |||| |||| || || | ||| | | || ||||||| | | | |||| | | Sbjct 802272 TTTGAGCCTCTAAGATAGCATACCATAACTTCT-GAGCCTTGACGGTCTGTCTTCCA-CG 802215 Query 71913 CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCT-- 71970 |||||||||||||||| | || || ||||||||| || || | ||||| Sbjct 802214 GTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAAT---TTGTCAGC 802158 Query 71971 -AATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 || || ||| |||||| || | | ||| | ||| ||| || | | ||||| ||| Sbjct 802157 CAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTACTCTTTT 802098 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 72089 ||| || | |||||| ||||| | |||| ||||| ||||||| ||| | || || || Sbjct 802097 CATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCTTCCTT 802038 Query 72090 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || |||||| ||| || | ||| | | |||||| | |||||| ||||| | ||| Sbjct 802037 ACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTA 801978 Query 72150 TATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 72209 | || | | || || | ||||||||| || ||||| | ||| | ||| ||||| || Sbjct 801977 CAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTGTTGTT 801918 Query 72210 ATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCT 72269 | | || | | ||| ||||||||||| ||||| | ||| ||||| |||| || ||| Sbjct 801917 AAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGC 801858 Query 72270 TCCACTGGCACGAATATTGCTAATTGAT----AGACCTATTCCCCCTGCCATTTTAGAGA 72325 || | | ||||||||| || ||| | ||| || || || || | || || | Sbjct 801857 ACCCGTTGAACGAATATT----ATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAA 801802 Query 72326 TTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTA 72384 | || || || ||| || ||||| |||||||| || || || || ||| ||||| | Sbjct 801801 TCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCA 801743 Query 72385 AGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAA 72444 | | || || ||||||||| | | || || ||||| || ||||| || ||| Sbjct 801742 ACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAA 801683 Query 72445 GCGTGCGTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC 72503 || || || || || ||| ||||| ||| |||||| ||||||||| | | ||||| Sbjct 801682 GCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGGATATC 801624 Query 72504 CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTT 72563 | ||| || || | || || | ||| | || || |||||||| || | | ||| Sbjct 801623 ATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCAACCTT 801564 Query 72564 GTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 72623 | | ||||| ||||| ||| | || || || || ||||| || |||||||| Sbjct 801563 ACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTGTAGTT 801504 Query 72624 AAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATC 72683 ||||| || ||| ||| |||| | || || | | ||| || | ||| ||||| Sbjct 801503 GAAGTCGCGATCGAAAACAATAGCAGAGTTCAACTCATCAGCATTGGCTTGAACAATATC 801444 Query 72684 CATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 72742 ||| | ||| || || || |||||||| || | || || || | ||| | | Sbjct 801443 GTAGGT-CTCCTTGGAGATCATGGGAGAATGCAGGTCAGTCTTTGGGTTGATATACTCGT 801385 Query 72743 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGG 72802 | || | || ||||| ||| | || |||||| ||| || | || || |||| Sbjct 801384 ACAACTGCTTACACACTTGTGAAAACTGCTTGATTGTTTGCTTATGCAAGTTGGAAACGG 801325 Query 72803 CTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | |||||||| || | ||| || || ||||| || Sbjct 801324 CAATTCTGGCTGCCAAAATAGCGTAGTCTGGGTG 801291 Score = 210 bits (232), Expect = 3e-49 Identities = 590/896 (66%), Gaps = 16/896 (2%) Strand=Plus/Minus Query 41761 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTC 41820 ||| ||||| ||||| || |||| || | ||||| ||||| || || || || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 41821 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 41880 ||| || || ||||||||||||||||| ||||| |||||||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 41881 CAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATT 41940 ||| || | ||||||||||| | ||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 41941 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 42000 ||| || | | || || | || | || | |||||| | |||||| | || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 42001 GTCTGTTATAATAGATCT-TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 42059 || || ||||| ||| || ||||| || ||| | ||||| |||| Sbjct 929220 TTCGGTGATAAT-CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACA 929162 Query 42060 TCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACG 42119 || || || || || || | ||| |||||||| | ||| |||||||| || || | Sbjct 929161 ATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATG 929102 Query 42120 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAA 42179 | || || ||||| | || | ||| || | ||| || ||||| |||||||| ||| | Sbjct 929101 TAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGA 929042 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCACTGTC 42237 |||| || || || || || || || |||| ||| | || || |||| ||| || Sbjct 929041 AGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAA--TGCATCTTC 928984 Query 42238 AT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 || || ||||| | |||||| || |||||||| || | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 |||||||| | | ||| || || ||| || | ||| ||||| ||||| | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 || ||||||| || || || || || || |||||||| || || ||| |||| || Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 42415 GGTAACCTGTACTTCTG--TACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 | ||| || ||||| | | ||| || ||| | || || ||||| || || || ||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCA 928746 Query 42473 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTT- 42531 || ||||| || || || | | || ||| | |||| | |||| || Sbjct 928745 GATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTG 928686 Query 42532 --ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCT 42589 ||||| |||| | || ||| | || | ||| || | ||||||||||| || Sbjct 928685 TCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCC 928626 Query 42590 TCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAA 42645 || || ||||| ||||| | |||||| || |||||| ||||| || | |||||| Sbjct 928625 TCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139124496840