Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq8 98.7 1e-15
seq3 91.5 1e-13
>seq8
Length=1028784
Score = 98.7 bits (108), Expect = 1e-15
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | ||| |||||||| | |||||||| ||||| |||||||| ||| |
Sbjct 325716 CCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 325657
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || |||||| | |||||||||||| | |||| | |||||| || |||||
Sbjct 325656 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGA 325597
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| || || || || || | | || | ||||| | || ||| ||
Sbjct 325596 ATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACC 325537
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||| || || || || || ||||| ||||||||
Sbjct 325536 TCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| ||| | |||||| ||||| | || ||||| ||||| || ||||| || |
Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || |||||| | |||||||||||| | |||| | |||||| || || ||
Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| || || || || || | | || | ||||| | || || |||
Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACT 326449
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || || || ||||| || || ||||| |||||||||
Sbjct 326448 TCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 326401
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | |||||| ||||| | |||||||| ||||| |||||||| ||
Sbjct 326172 CCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGAT 326113
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| ||| || |||||| | |||||||||||| | |||| | ||| || || || ||
Sbjct 326112 AATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 326053
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| || || || || || | | || | ||||| | || || |||
Sbjct 326052 ATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACT 325993
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| | ||| | || || || ||||| || || ||||| |||||||||
Sbjct 325992 TCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 325945
>seq3
Length=1410883
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/214 (71%), Gaps = 12/214 (6%)
Strand=Plus/Plus
Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691
|||||||| ||| ||||| || |||||||| || || ||||| || | ||||||||
Sbjct 929218 GAAGCCGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGT 929277
Query 50692 ATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGC 50749
||||| |||| | ||||||| | || | || ||||||||||| ||||| || |||||
Sbjct 929278 ATGAATAGCAG-CTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGC 929336
Query 50750 AGCTGGGACAACCGAAA----TACTATAATGCACGTAACCCCTTTCCGTTTATGAATAAC 50805
| || ||| ||| ||| || | || || || ||| || ||| | |||
Sbjct 929337 --TTTGGGTAACGAAAAGGTGTACAATGTTACA---AATCCTTTTGATTTCATGGAAAAC 929391
Query 50806 ATATCGTTGGAGGGCAAAACAAACTTTTTCGAAA 50839
|| || |||| || ||||| |||||||| ||||
Sbjct 929392 ATCTCCTTGGCTGGTAAAACCAACTTTTTTGAAA 929425
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || | ||| || ||||| | ||||| || ||||| ||||| || || |
Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||| | ||||||||||| |||| | | ||||||||| || ||
Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||| ||||| ||||||| || | | || | ||||| | || ||| ||
Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | ||||| || || || || || ||||| ||||||||
Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782
Score = 84.2 bits (92), Expect = 2e-11
Identities = 319/498 (64%), Gaps = 17/498 (3%)
Strand=Plus/Minus
Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241
|| |||||||| ||||| || | || |||||||||||| | |||| ||| | ||
Sbjct 803305 AAGTAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAGGTCAAC 803246
Query 156242 TTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCT 156301
|| || ||||||| | |||| | ||||| ||| || ||| ||||| || ||
Sbjct 803245 TTGCCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGATGAAAGCA 803186
Query 156302 CCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATT 156361
||||| |||||||| || || |||| ||| | | || ||||| |
Sbjct 803185 GATCTGTCGGCTGCCATGTCGATGATATGCTTT---------TGGGATATCTCCCACACG 803135
Query 156362 GTCATGTACAGCTTTTTTAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTG 156421
|| |||||| | ||| || | || ||||| |||| | || ||||| || |
Sbjct 803134 GTTTTGTACAATTGTTTGAGCTCATCTGGAATGTTGGGCAACGATTGGATCGAACCGTTA 803075
Query 156422 TTTGCCATGATTGTTTTTCGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCG 156481
|||| ||||| | ||| |||| | | | | ||| || |||| | ||| |
Sbjct 803074 TTTGAAATGATATTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCAAATCCTTC 803015
Query 156482 ACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT- 156540
| |||||| ||||||| | ||| || || || | ||| || | |||| | | | ||
Sbjct 803014 AACAAGTATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTC 802955
Query 156541 --ACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTC 156598
| ||| | || ||||| | ||||||||| | ||||| | ||| | || ||
Sbjct 802954 GAAGTGT---ATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTA 802898
Query 156599 GGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAAC 156658
||||| || ||||||||||| || | || || | ||| || ||| |||||
Sbjct 802897 GGCATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCAA- 802839
Query 156659 TGTG-ACCAGTCCCATAA 156675
|||| ||||||||| ||
Sbjct 802838 TGTGTCCCAGTCCCACAA 802821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507014342960880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |