Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 1e-15 seq3 91.5 1e-13 >seq8 Length=1028784 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| |||||||| | |||||||| ||||| |||||||| ||| | Sbjct 325716 CCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 325657 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | |||||||||||| | |||| | |||||| || ||||| Sbjct 325656 AAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGA 325597 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | ||||| | || ||| || Sbjct 325596 ATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACC 325537 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || || || || ||||| |||||||| Sbjct 325536 TCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||| ||||| | || ||||| ||||| || ||||| || | Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||||||||| | |||| | |||||| || || || Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | ||||| | || || ||| Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACT 326449 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| || || ||||| ||||||||| Sbjct 326448 TCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 326401 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | |||||| ||||| | |||||||| ||||| |||||||| || Sbjct 326172 CCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGAT 326113 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||||||||| | |||| | ||| || || || || Sbjct 326112 AATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGG 326053 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || || | | || | ||||| | || || ||| Sbjct 326052 ATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACT 325993 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | || || || ||||| || || ||||| ||||||||| Sbjct 325992 TCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 325945 >seq3 Length=1410883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/214 (71%), Gaps = 12/214 (6%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 |||||||| ||| ||||| || |||||||| || || ||||| || | |||||||| Sbjct 929218 GAAGCCGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGT 929277 Query 50692 ATGAAC-GCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTT-GTTGC 50749 ||||| |||| | ||||||| | || | || ||||||||||| ||||| || ||||| Sbjct 929278 ATGAATAGCAG-CTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGC 929336 Query 50750 AGCTGGGACAACCGAAA----TACTATAATGCACGTAACCCCTTTCCGTTTATGAATAAC 50805 | || ||| ||| ||| || | || || || ||| || ||| | ||| Sbjct 929337 --TTTGGGTAACGAAAAGGTGTACAATGTTACA---AATCCTTTTGATTTCATGGAAAAC 929391 Query 50806 ATATCGTTGGAGGGCAAAACAAACTTTTTCGAAA 50839 || || |||| || ||||| |||||||| |||| Sbjct 929392 ATCTCCTTGGCTGGTAAAACCAACTTTTTTGAAA 929425 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || ||||| | ||||| || ||||| ||||| || || | Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||||||||||| |||| | | ||||||||| || || Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||||| || | | || | ||||| | || ||| || Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || || || || || ||||| |||||||| Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 319/498 (64%), Gaps = 17/498 (3%) Strand=Plus/Minus Query 156182 AAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATT 156241 || |||||||| ||||| || | || |||||||||||| | |||| ||| | || Sbjct 803305 AAGTAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAGGTCAAC 803246 Query 156242 TTAGGCAAAGTAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGATAAATGCT 156301 || || ||||||| | |||| | ||||| ||| || ||| ||||| || || Sbjct 803245 TTGCCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGATGAAAGCA 803186 Query 156302 CCCCTGTCTGCTGCCATTTCAATCATATATTTTCCATTGTTCTCCCAAATTTCCCAGATT 156361 ||||| |||||||| || || |||| ||| | | || ||||| | Sbjct 803185 GATCTGTCGGCTGCCATGTCGATGATATGCTTT---------TGGGATATCTCCCACACG 803135 Query 156362 GTCATGTACAGCTTTTTTAGATTGTCGGGAATTTTGGCGATAGAAGCTATCGATCCTCTG 156421 || |||||| | ||| || | || ||||| |||| | || ||||| || | Sbjct 803134 GTTTTGTACAATTGTTTGAGCTCATCTGGAATGTTGGGCAACGATTGGATCGAACCGTTA 803075 Query 156422 TTTGCCATGATTGTTTTTCGCATACTATTTGTATAGAGATTTAATTTGATTAGATCATCG 156481 |||| ||||| | ||| |||| | | | | ||| || |||| | ||| | Sbjct 803074 TTTGAAATGATATTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCAAATCCTTC 803015 Query 156482 ACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATT- 156540 | |||||| ||||||| | ||| || || || | ||| || | |||| | | | || Sbjct 803014 AACAAGTATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTC 802955 Query 156541 --ACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTC 156598 | ||| | || ||||| | ||||||||| | ||||| | ||| | || || Sbjct 802954 GAAGTGT---ATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTA 802898 Query 156599 GGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAAC 156658 ||||| || ||||||||||| || | || || | ||| || ||| ||||| Sbjct 802897 GGCATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCAA- 802839 Query 156659 TGTG-ACCAGTCCCATAA 156675 |||| ||||||||| || Sbjct 802838 TGTGTCCCAGTCCCACAA 802821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014342960880