Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 >seq3 Length=1410883 Score = 161 bits (178), Expect = 1e-34 Identities = 572/884 (65%), Gaps = 20/884 (2%) Strand=Plus/Plus Query 124996 TGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTT 125055 ||||||| ||||| ||||| || || ||| ||||||||||||| ||| |||| || |||| Sbjct 928577 TGTTTCCAATCAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGCTTCATTTT 928636 Query 125056 GGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTGACT 125114 |||| | || || | || || |||||| || | || ||| | ||| | || | | Sbjct 928637 GGACTGCTGAGGAAATTGACTTGGGTAAGGACTTGCATGACTGGAAGGACAAG-TTAAAT 928695 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || | ||| | || || || || || || |||||||| | || ||||| || Sbjct 928696 GACAATGAAAGGTTTTTCATTTCAAGAATCTTAGCTTTCTTTGCTGCATCTGATGGTATT 928755 Query 125175 GTCAACGACAA-TCTGTTGACACGATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCG 125231 |||||||| || | ||||| || | ||||| | | || ||||||| | Sbjct 928756 GTCAACGAGAACTTGGTTGA---GAATTTCTCAGCTGAAGTTCAAGTTCCAGAAGCCAAA 928812 Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 |||||||| ||||| ||||||||||| ||||| | ||||| |||| |||||| | || Sbjct 928813 TGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTTTATTG 928872 Query 125292 ATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGACACG 125351 ||||| | || || ||||| || || | | ||||| ||||| |||| Sbjct 928873 ATTGATACCTATATCAAGGATCCAAAAGAGGCTGACTTTTTGTTTAATGCAATTGACAAC 928932 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 | || | ||| || |||||| | |||| | | |||||| | || || | | Sbjct 928933 ATTCCATGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACGATGAAGATGCA 928992 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | | || || | || || || ||||| || || ||||| || ||||| ||| Sbjct 928993 TTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCTTCAGTGGTTCA 929052 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 ||||| | ||||| ||| | |||||| | || | ||||| || || || | |||| Sbjct 929053 TTTGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTACATTCTCTAAC 929112 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590 || || || | |||| || || |||| ||||||||| || |||| || | Sbjct 929113 GAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGCTTGCTTATTGTTCTCTC-- 929170 Query 125591 CTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGC 125650 || ||| | || ||||| || |||| || | ||| | ||||| || Sbjct 929171 --ATTTGCAAAAC-AGACCAGATGCA-----GAAATTGTTGAGAGGATTATCACCGAAGC 929222 Query 125651 CGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAA 125710 ||| | || ||| | || ||| | ||||| | |||| ||| || | || ||||| Sbjct 929223 CGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGTATGAA 929282 Query 125711 CTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGAT 125770 ||| | ||||| | || | || ||||| |||||| | || | | ||| Sbjct 929283 TAGCAGCTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGCTTTGGG 929342 Query 125771 TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGA 125830 | | ||| | ||||| | | ||||| |||||||||||| | ||| || | | Sbjct 929343 TAACGAAAAGGTGTACAATGTTACAAATCCTTTTGATTTCATGGAAAACATCTCCTTGGC 929402 Query 125831 GGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA-CAAA 125873 ||||| ||||||||||| || |||| ||||| || || |||| Sbjct 929403 TGGTAAAACCAACTTTTTTGAAAAGAGAGTCAGTGACTATCAAA 929446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059116630840