Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 174 1e-38 >seq3 Length=1410883 Score = 174 bits (192), Expect = 1e-38 Identities = 579/886 (65%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || || ||||| |||||||||||||| ||||| || | || || || ||| Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTA----TTTTTTACACCCTAATTCTAG 12975 ||||| ||||| ||||||||| | ||| || ||| |||| |||| || | | Sbjct 929387 TCCATGAAATCAAAAGGATTTGT--AAC-ATTGTACACCTTTTCGTTACCC-AAAGCAAC 929332 Query 12976 TAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTAT 13035 ||| ||||| || |||||||| || | || || ||| || | ||||| || | Sbjct 929331 TAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAA 929272 Query 13036 TAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAAC 13095 || ||||| | || || || ||||| | ||||| || ||| |||||| | | Sbjct 929271 CAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGA- 929213 Query 13096 TATGTCTCTTATTACGTTCT-CTAATGGAGGATTTGATAGATGCTTAAACATCATACATG 13154 || |||| | | |||| | ||| ||| | ||| |||| | || | Sbjct 929212 TAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAG 929153 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||| ||| || || ||||||||||| | || | ||||| || ||||| ||||| | Sbjct 929152 CAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTG 929093 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAAC--CCGaaaaaaaTAT 13272 |||| | |||| || || | ||| || |||| ||||| |||| | ||| |||||| Sbjct 929092 GCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATA- 929034 Query 13273 TCCTTCAACTGCTGCAAACGCTATCAACCTTTCACC--ATACGTACTATTTTTACTCTCT 13330 || ||||| || || || || | | | |||||| ||| | | || || | | Sbjct 929033 -CCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATA-ATGC-ATCTTCATCGTTG 928977 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 ||||| | ||||||| || || | || | || || || || ||||| ||| Sbjct 928976 ATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTA 928917 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || ||| | | || || || ||||| ||||| |||||||| || || Sbjct 928916 AACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTT 928857 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 ||||| || ||||| |||||| ||||| || |||||||| ||| | || |||| || Sbjct 928856 TCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACT 928797 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 |||||||| | | || | || | ||||| ||||| || || || ||| |||||| Sbjct 928796 TGAACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCA 928737 Query 13571 aaaaaaGCAAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACAACTT---TAACC 13625 || ||||| | | | ||| ||| || |||| || || ||||| || Sbjct 928736 AAGAAAGCTA--AGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCC 928679 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | || | || || || || || | |||||| | |||||||| ||||| |||| | Sbjct 928678 AGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTT 928619 Query 13686 TCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAAC 13731 | || ||||| ||| || || | ||| || ||||||| ||| Sbjct 928618 TTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAAC 928573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982352726618