Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq3 219 1e-51
seq8 143 6e-29
>seq3
Length=1410883
Score = 219 bits (242), Expect = 1e-51
Identities = 600/903 (66%), Gaps = 27/903 (3%)
Strand=Plus/Plus
Query 268703 TTTGTGATATTTCCAATACAGC-ATGGTGATATATGGAGGATGTACAAACAGGCCGTTGC 268761
||||| | |||||||| ||| || || || ||| ||||||||| | || | ||
Sbjct 928570 TTTGTTTTGTTTCCAAT-CAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGC 928628
Query 268762 TTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAA---AA 268818
||| |||||||||| || ||| | || || | | ||||| || ||||| ||
Sbjct 928629 TTCATTTTGGACTGCTGAGGAAATTGACTTGGGTAAGGACTTGCATGACTGGAAGGACAA 928688
Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGCAGTTAGTG 268877
||||| | ||||| || || || | | |||| || || ||||| | ||
Sbjct 928689 GTTAAATGACAATGAAAGGTTTTTCATTTCA-AGAATCTTAGCTTTCTTTGCTGCATCTG 928747
Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAG 268937
||||||| || ||||| || | || ||||| |||| || || || |||| ||||
Sbjct 928748 ATGGTATTGTCAACGAGAACTTGGTTGAGAATTTCTCAGCTGAAGTTCAAGTTCCAGAAG 928807
Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997
||| ||| ||||| ||||| || || || || ||||| || ||||| | ||| |
Sbjct 928808 CCAAATGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTT 928867
Query 268998 TATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-GACTATTTTCTT----C 269052
|||| || ||||| ||||| | ||| | |||||| |||| ||| || |
Sbjct 928868 TATTGATTGATACCTATATCAAGGAT-----CCAAAAGAGGCTGACTTTTTGTTTAATGC 928922
Query 269053 TAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG 269111
|| || ||| | | ||| | | || || |||| |||||| ||| |||||| ||||
Sbjct 928923 AATTGACAACATTCCA-TGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACG 928981
Query 269112 ATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168
|| | || ||| ||| ||| | | |||||||| || ||||| || ||||| ||||
Sbjct 928982 ATGAAGATGCATTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCT 929041
Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228
| || || ||||| ||||||| ||||||||||| ||||| | |||||||| | |
Sbjct 929042 TCAGTGGTTCATTTGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTA 929101
Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTAT 269288
| ||||||||||||||||| |||| || ||||||||||| ||||| ||||| ||||
Sbjct 929102 CATTCTCTAACGAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGCTTGCTTAT 929161
Query 269289 TATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATT 269348
| || || ||| | | ||| ||| | ||| | || | |||||
Sbjct 929162 TGTTCTCTCATT---TGCAAAACAGACCAGATGCAGAAATTGTTGAGAGGATTATCACCG 929218
Query 269349 CAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTA 269408
||| ||| | | |||| |||||| | || || || || || || | | | ||||
Sbjct 929219 AAGCCGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGTA 929278
Query 269409 TGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTT 269468
||||||||| | |||| ||||| | | || || | |||||||| | || |||
Sbjct 929279 TGAATAGCAGCTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGCTT 929338
Query 269469 TAGGGTTTAGTAAA-AAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCA 269527
| |||| | ||| || || ||| |||||| ||| ||| ||||| || || ||
Sbjct 929339 T-GGGTAACGAAAAGGTGTACAATGTTACAAATCCTTTTGATTTCATGGAAAACATCTCC 929397
Query 269528 TTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTA 269587
|| | ||||| | || || || || ||| | || ||| ||||||| || || |||
Sbjct 929398 TTGGCTGGTAAAACCAACTTTTTTGAAAAGAGAGTCAGTGACTATCAAAAGGCAGGAGTA 929457
Query 269588 ATG 269590
|||
Sbjct 929458 ATG 929460
Score = 127 bits (140), Expect = 5e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| | || | || | ||| || ||||| || || || || |||||||||||
Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||||| || ||||| | ||||| ||||| || |||| || || |||||||| ||
Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| || || ||||| |||| || ||||| || | || || | ||| |||
Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|||| |||||||||||||| || | || || || || || ||||| ||
Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785
>seq8
Length=1028784
Score = 143 bits (158), Expect = 6e-29
Identities = 172/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | || | |||||| || ||||| || ||||| || ||||||
Sbjct 325947 ATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA 325888
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||||| |||||||||| |||||| || || ||||||| || ||||| || ||
Sbjct 325887 GATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGT 325828
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508
|| || ||||| ||||| ||||| ||| || || || || || | || ||| || ||
Sbjct 325827 GGGATACCTTCCTTATCTTGAAT-TTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTC 325769
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||||| ||||| ||||||||||| | || || || || || |||||
Sbjct 325768 GACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
Score = 129 bits (142), Expect = 1e-24
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| |||||| |||||||| || || || || |||||
Sbjct 325719 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 325660
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | ||||| |||||||| | |||||| ||||| ||||| | || || || || |||
Sbjct 325659 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGA 325600
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| ||||| || ||||| || || || || | ||| || | |||
Sbjct 325599 GGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCG 325540
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| | |||||||||||||| || | || || || || || |||||| ||
Sbjct 325539 ACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATTGTG 325486
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| ||| | || | |||||| || ||||| || |||||||| ||||| ||
Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| |||||||||||||| | |||||| ||||| ||||| | ||| || || || || ||
Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|| ||||| ||||| || ||||| || ||||| || | || || | || ||
Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACT 326449
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| | |||||||| || ||||| | || || || || || |||||
Sbjct 326448 TCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398267229372
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |