Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 219 1e-51 seq8 143 6e-29 >seq3 Length=1410883 Score = 219 bits (242), Expect = 1e-51 Identities = 600/903 (66%), Gaps = 27/903 (3%) Strand=Plus/Plus Query 268703 TTTGTGATATTTCCAATACAGC-ATGGTGATATATGGAGGATGTACAAACAGGCCGTTGC 268761 ||||| | |||||||| ||| || || || ||| ||||||||| | || | || Sbjct 928570 TTTGTTTTGTTTCCAAT-CAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGC 928628 Query 268762 TTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAA---AA 268818 ||| |||||||||| || ||| | || || | | ||||| || ||||| || Sbjct 928629 TTCATTTTGGACTGCTGAGGAAATTGACTTGGGTAAGGACTTGCATGACTGGAAGGACAA 928688 Query 268819 TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGCAGTTAGTG 268877 ||||| | ||||| || || || | | |||| || || ||||| | || Sbjct 928689 GTTAAATGACAATGAAAGGTTTTTCATTTCA-AGAATCTTAGCTTTCTTTGCTGCATCTG 928747 Query 268878 ATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAG 268937 ||||||| || ||||| || | || ||||| |||| || || || |||| |||| Sbjct 928748 ATGGTATTGTCAACGAGAACTTGGTTGAGAATTTCTCAGCTGAAGTTCAAGTTCCAGAAG 928807 Query 268938 CCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTC 268997 ||| ||| ||||| ||||| || || || || ||||| || ||||| | ||| | Sbjct 928808 CCAAATGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTT 928867 Query 268998 TATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-GACTATTTTCTT----C 269052 |||| || ||||| ||||| | ||| | |||||| |||| ||| || | Sbjct 928868 TATTGATTGATACCTATATCAAGGAT-----CCAAAAGAGGCTGACTTTTTGTTTAATGC 928922 Query 269053 TAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG 269111 || || ||| | | ||| | | || || |||| |||||| ||| |||||| |||| Sbjct 928923 AATTGACAACATTCCA-TGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACG 928981 Query 269112 ATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCT 269168 || | || ||| ||| ||| | | |||||||| || ||||| || ||||| |||| Sbjct 928982 ATGAAGATGCATTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCT 929041 Query 269169 TTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAA 269228 | || || ||||| ||||||| ||||||||||| ||||| | |||||||| | | Sbjct 929042 TCAGTGGTTCATTTGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTA 929101 Query 269229 CTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTAT 269288 | ||||||||||||||||| |||| || ||||||||||| ||||| ||||| |||| Sbjct 929102 CATTCTCTAACGAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGCTTGCTTAT 929161 Query 269289 TATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATT 269348 | || || ||| | | ||| ||| | ||| | || | ||||| Sbjct 929162 TGTTCTCTCATT---TGCAAAACAGACCAGATGCAGAAATTGTTGAGAGGATTATCACCG 929218 Query 269349 CAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTA 269408 ||| ||| | | |||| |||||| | || || || || || || | | | |||| Sbjct 929219 AAGCCGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGTA 929278 Query 269409 TGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTT 269468 ||||||||| | |||| ||||| | | || || | |||||||| | || ||| Sbjct 929279 TGAATAGCAGCTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGCTT 929338 Query 269469 TAGGGTTTAGTAAA-AAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCA 269527 | |||| | ||| || || ||| |||||| ||| ||| ||||| || || || Sbjct 929339 T-GGGTAACGAAAAGGTGTACAATGTTACAAATCCTTTTGATTTCATGGAAAACATCTCC 929397 Query 269528 TTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTA 269587 || | ||||| | || || || || ||| | || ||| ||||||| || || ||| Sbjct 929398 TTGGCTGGTAAAACCAACTTTTTTGAAAAGAGAGTCAGTGACTATCAAAAGGCAGGAGTA 929457 Query 269588 ATG 269590 ||| Sbjct 929458 ATG 929460 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || | || | ||| || ||||| || || || || ||||||||||| Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||| || ||||| | ||||| ||||| || |||| || || |||||||| || Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || ||||| |||| || ||||| || | || || | ||| ||| Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| |||||||||||||| || | || || || || || ||||| || Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 >seq8 Length=1028784 Score = 143 bits (158), Expect = 6e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | |||||| || ||||| || ||||| || |||||| Sbjct 325947 ATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA 325888 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| |||||||||| |||||| || || ||||||| || ||||| || || Sbjct 325887 GATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGT 325828 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| ||||| ||||| ||| || || || || || | || ||| || || Sbjct 325827 GGGATACCTTCCTTATCTTGAAT-TTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTC 325769 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| ||||| ||||||||||| | || || || || || ||||| Sbjct 325768 GACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| |||||| |||||||| || || || || ||||| Sbjct 325719 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 325660 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||||| |||||||| | |||||| ||||| ||||| | || || || || ||| Sbjct 325659 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGA 325600 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || || | ||| || | ||| Sbjct 325599 GGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCG 325540 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | |||||||||||||| || | || || || || || |||||| || Sbjct 325539 ACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATTGTG 325486 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| ||| | || | |||||| || ||||| || |||||||| ||||| || Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||||||||| | |||||| ||||| ||||| | ||| || || || || || Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || ||||| || ||||| || | || || | || || Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACT 326449 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || | |||||||| || ||||| | || || || || || ||||| Sbjct 326448 TCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398267229372