Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq3 159 3e-34
seq8 132 4e-26
>seq3
Length=1410883
Score = 159 bits (176), Expect = 3e-34
Identities = 172/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||||||||| ||| ||||| ||||| ||||| |||||||| | |||||| || |
Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || || ||| |||| |||||| || | |||||||||||||||||||| || |||
Sbjct 317616 AAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGA 317675
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| ||||| | |||||||| |||||| | | | |||||||| | |||||
Sbjct 317676 ATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACC 317735
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
|| | || || || || || || | ||| || || || || ||||||
Sbjct 317736 TCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATG 317783
>seq8
Length=1028784
Score = 132 bits (146), Expect = 4e-26
Identities = 175/241 (73%), Gaps = 4/241 (2%)
Strand=Plus/Minus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || || |||||||||| ||| ||||| || ||||||||||||||||| | |
Sbjct 326184 AAAATTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATG 326125
Query 94829 TTATAATCGCTCATAGTGTT--GGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| || || | ||| |||| | || || | ||||| || | || || |||||||
Sbjct 326124 TTGTAGTC--TGATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTT 326067
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
| || ||||| || |||||||| || || | || || ||||||| | | | |||||
Sbjct 326066 GTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGT 326007
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
||| | || || || | ||||| ||||||||||| | ||| || || ||||| ||||
Sbjct 326006 CAGAGGACTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCA 325947
Query 95007 T 95007
|
Sbjct 325946 T 325946
Score = 131 bits (144), Expect = 2e-25
Identities = 170/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| ||||| || ||||| ||||||||||| | ||| |
Sbjct 326408 TTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGT 326349
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| ||| || || | || |||| ||||| ||| |||||||||||||||| || |
Sbjct 326348 AGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGT 326289
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||| || |||||||| || || | || || ||||||| | ||| ||| ||||
Sbjct 326288 CTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAG 326229
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || | ||||| |||||||| || | ||| || || || || |||||
Sbjct 326228 ACTCAACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174
Score = 127 bits (140), Expect = 2e-24
Identities = 169/235 (72%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| || || || ||||||||||||||||| | ||| |
Sbjct 325724 TTTGCATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGT 325665
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
| ||| || || | || |||| ||||| || | || || ||||||||||| |
Sbjct 325664 AGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGT 325605
Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952
|||||||||||||||| || || | || || ||||||| | ||| ||||||| |
Sbjct 325604 CTGGAGGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGG 325545
Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || | || || || || || || | ||| || || ||||| |||||
Sbjct 325544 ATTCGACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490
Score = 125 bits (138), Expect = 6e-24
Identities = 171/236 (72%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || || |||||||||| ||| ||||| || ||||| ||||||||||| | ||| |
Sbjct 325952 TTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGT 325893
Query 94833 AATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGA 94891
| || | | || || || || || | ||||| ||| | || ||||||||||| ||
Sbjct 325892 AGTCAGATAAT-GTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGG 325834
Query 94892 TCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCG 94951
||||| || |||||||| || || | |||||| ||||||| | ||| ||||| |
Sbjct 325833 TCTGGTGGGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAA 325774
Query 94952 TGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || | || ||||| || ||||| | ||| || || ||||| |||||
Sbjct 325773 GACTCGACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| || | ||| ||||| || ||||| ||||||||||| | || || || |
Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| || | || |||| ||||| || | || || || |||||||| ||||| |||
Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|||||||| || || | || || |||||| | | | |||||||| | || ||
Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACT 326449
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | || || ||||||||||| | ||| || || ||||| |||||
Sbjct 326448 TCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448291149567240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |