Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5 131 3e-26 >seq5 Length=1138348 Score = 131 bits (144), Expect = 3e-26 Identities = 194/270 (72%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 |||||||||||| | | | |||| |||||||||| ||||| ||||| |||||||||| Sbjct 992926 CGCTAAGCGTCACAGAAAAA-TCTTAAGAGATAACATTCAAGGTATCACTAAGCCAGCTA 992868 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | | |||| | | ||||| || |||||| |||||| ||| |||| ||||| Sbjct 992867 TCAGAAGATTGGCAAGAAGAGGTGGTGTTAAGCGTATCTCTGCTTTGATCTACGAAGAAG 992808 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACC 16609 || | | ||| |||||| || | ||| ||| || |||| | || || |||||| Sbjct 992807 TTAGAGTTGTCTTGAAGTCATTTTTAGAGAACGTCATTAGAGATGCCGTTACA-TATACC 992749 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 || ||||| || | |||||||| || ||| ||||| |||| ||||| ||||| | ||| Sbjct 992748 GAACACGCAAAGAGAAAGACTGTTACTTCCTTGGATGTCGTTTATGCTTTGAAGAGACAA 992689 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||| || ||||| Sbjct 992688 GGTAGAACTTTGTACGGTTTCGGTGGTTAA 992659 Score = 125 bits (138), Expect = 1e-24 Identities = 190/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||||| | |||| ||||| ||||| ||||||||||||||||| Sbjct 455026 GCCAAGCGTCACAGAAAGATCT-TGAGAGACAACATTCAAGGTATCACCAAGCCAGCTAT 455084 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | |||| | | ||||| ||||||||| |||||| || | || ||||| | Sbjct 455085 CAGAAGATTGGCCAGAAGAGGTGGTGTCAAGCGTATCTCTGCTTTAATTTACGAAGAAGT 455144 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||||||||| ||| | ||| ||| ||| ||||| | ||| ||||| Sbjct 455145 AAGAGTAGTTTTGAAGTCATTCTTGGAGAACGTCATCAGAGATGCCGTTACCTACACCGA 455204 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||||| | ||||| ||||| || |||| | ||||| || ||||| | ||||| Sbjct 455205 ACACGCTAAGAGAAAGACCGTCACTTCATTGGACGTTGTCTACGCTTTGAAGAGACAAGG 455264 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | | || |||||||| ||||| Sbjct 455265 CAGAACCTTGTACGGTTTTGGTGGTTAA 455292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075191771237