Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq3 206 3e-48
>seq3
Length=1410883
Score = 206 bits (228), Expect = 3e-48
Identities = 579/886 (65%), Gaps = 19/886 (2%)
Strand=Plus/Minus
Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244
|||||||| ||||| ||||| ||||| ||||| || || || || |||| || || |
Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388
Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATTTTATTACAACCCAGTTCTGATA 21302
||||| |||||||| |||||| | | ||| || | |||| | ||||| | ||
Sbjct 929387 TCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTT--ACCCAAAGCAACTA 929330
Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362
||||||||||||| |||||||| | |||||||||||| || | ||||||||| | ||
Sbjct 929329 ATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACA 929270
Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAA 21419
| ||||| | || | || ||||| ||||| || | |||||||| | ||
Sbjct 929269 AAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAA 929210
Query 21420 TTATATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478
| | | | || || || | | | ||| | | |||| || ||
Sbjct 929209 TCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAG----AACAATAAGCAA 929154
Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538
||||| ||| ||| ||||||||||| || | || ||||| ||||| ||||| | |||
Sbjct 929153 GCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCT 929094
Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598
||||| | |||||||| || ||||| || || || ||||||| || ||||||||
Sbjct 929093 GGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATA 929034
Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658
|||||||| ||||| || ||||| | ||||||||| || | |||| ||| |||
Sbjct 929033 CCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATC 928974
Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718
||| | ||||| | ||||| | || ||||| ||| | ||||| || || ||
Sbjct 928973 CATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAAC 928914
Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778
| | | || | | ||| | || | || ||||
Sbjct 928913 AAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCT 928854
Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838
|| || ||||| || ||| || |||||||| ||||| ||| | || |||| | ||||
Sbjct 928853 GAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGA 928794
Query 21839 ACCTCGG--AATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896
|| || | | ||| || | | ||||||| || || || || |||||| || ||||
Sbjct 928793 ACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAA 928736
Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT---TTTCCAAT 21953
| || || || || || || ||| | | ||| || || |||| || ||||| |
Sbjct 928735 AGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGT 928676
Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013
| || || || || || | ||| |||| |||||||| ||| ||| ||||
Sbjct 928675 CATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTT 928616
Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059
| ||||| |||||| || | |||| | |||||||| | |||||
Sbjct 928615 TGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531900740161160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |