Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq3 206 3e-48 >seq3 Length=1410883 Score = 206 bits (228), Expect = 3e-48 Identities = 579/886 (65%), Gaps = 19/886 (2%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 |||||||| ||||| ||||| ||||| ||||| || || || || |||| || || | Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388 Query 21245 TCCATAAAATCAAATGGATTT-TCAGATT-TAAATATTTTATTACAACCCAGTTCTGATA 21302 ||||| |||||||| |||||| | | ||| || | |||| | ||||| | || Sbjct 929387 TCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTT--ACCCAAAGCAACTA 929330 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 ||||||||||||| |||||||| | |||||||||||| || | ||||||||| | || Sbjct 929329 ATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACA 929270 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA---ACAA 21419 | ||||| | || | || ||||| ||||| || | |||||||| | || Sbjct 929269 AAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAA 929210 Query 21420 TTATATTTATTATC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACAT 21478 | | | | || || || | | | ||| | | |||| || || Sbjct 929209 TCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAG----AACAATAAGCAA 929154 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||| ||| ||||||||||| || | || ||||| ||||| ||||| | ||| Sbjct 929153 GCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCT 929094 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | |||||||| || ||||| || || || ||||||| || |||||||| Sbjct 929093 GGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATA 929034 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 |||||||| ||||| || ||||| | ||||||||| || | |||| ||| ||| Sbjct 929033 CCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATC 928974 Query 21659 CATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAA 21718 ||| | ||||| | ||||| | || ||||| ||| | ||||| || || || Sbjct 928973 CATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAAC 928914 Query 21719 AGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCA 21778 | | | || | | ||| | || | || |||| Sbjct 928913 AAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCT 928854 Query 21779 GAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGA 21838 || || ||||| || ||| || |||||||| ||||| ||| | || |||| | |||| Sbjct 928853 GAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGA 928794 Query 21839 ACCTCGG--AATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 || || | | ||| || | | ||||||| || || || || |||||| || |||| Sbjct 928793 ACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAA 928736 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT---TTTCCAAT 21953 | || || || || || || ||| | | ||| || || |||| || ||||| | Sbjct 928735 AGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGT 928676 Query 21954 CTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTT 22013 | || || || || || | ||| |||| |||||||| ||| ||| |||| Sbjct 928675 CATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTT 928616 Query 22014 TATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAA 22059 | ||||| |||||| || | |||| | |||||||| | ||||| Sbjct 928615 TGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900740161160