Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3 329 4e-85 >seq3 Length=1410883 Score = 329 bits (364), Expect = 4e-85 Identities = 899/1359 (66%), Gaps = 56/1359 (4%) Strand=Plus/Minus Query 62706 ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62765 || || || || |||| ||||| ||||| | | | || ||||| |||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 62766 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TG 62822 | | |||||||||| |||||||||||| || || ||| | || | || | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 62823 ACAA--TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---------CAT 62871 || |||||| | ||| | ||||| ||||| | | | ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 62872 CTATT---ACAAA--CATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62926 | | ||||| || | ||||| | |||||||| ||||| || || ||||||| Sbjct 802452 CACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACATACAGCAACCTCATC 802395 Query 62927 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 62986 | | | | |||| | ||||| || | ||| | || ||| | || ||||| Sbjct 802394 TGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATT 802335 Query 62987 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63046 | ||| ||| |||| |||||||| ||||| |||||||| |||||||||||||| || || Sbjct 802334 CTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTC 802275 Query 63047 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC 63105 | |||| |||| || || | ||| | | || ||||||| | | | ||| | Sbjct 802274 TGTTTGAGCCTCTAAGATAGCATACCATAACTTCT-GAGCCTTGAC----GGTCTGTCT- 802221 Query 63106 TCC-----TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63160 ||| |||||||||||||| | ||||| ||||||||| || || | || Sbjct 802220 TCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAAT---TT 802164 Query 63161 GTC---CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 63217 ||| ||| || ||| ||||| || | | ||| | ||| ||| | | || || Sbjct 802163 GTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTAC 802104 Query 63218 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTC 63277 || |||||| || | |||||| ||||| | |||| ||||| ||||||| ||| | ||| Sbjct 802103 TCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTC 802044 Query 63278 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTC 63337 || || || |||||| ||| || | ||| | | |||||| | |||||| ||||| Sbjct 802043 TTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTC 801984 Query 63338 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 63397 | ||| | || | | ||||| | ||||||||| || ||||| | ||| | ||| || Sbjct 801983 GATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGT 801924 Query 63398 GTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGAT 63457 ||| ||| | || | | ||| |||||||||||||| || |||| ||||| |||| || Sbjct 801923 GTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAAT 801864 Query 63458 ATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 63517 ||| || | | |||||||||| || | ||| || || || || | || || Sbjct 801863 GTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGA 801804 Query 63518 GATTAATGCGCATCGTTTT-AACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 || || || || ||| || ||||||||||||||||| || ||| || || ||||| Sbjct 801803 AATCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGG 801745 Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636 || | || || ||||||||| | | || || ||||| || ||||| || | Sbjct 801744 CAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGG 801685 Query 63637 AAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC---TGAGTCT 63692 |||| || || || || ||| ||| | ||| |||||| ||||||||| | || | Sbjct 801684 AAGCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGG--- 801629 Query 63693 ATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACG 63752 ||||| | |||||| || | || || | ||| | || ||| |||||||| || | Sbjct 801628 ATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCA 801569 Query 63753 ATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 63812 | ||| || | ||||| ||||| ||| | || || || || ||||| || |||||| Sbjct 801568 ACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTG 801509 Query 63813 TATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACT 63872 || ||||| || ||| ||| |||| | ||||| | | ||| || | ||| Sbjct 801508 TAGTTGAAGTCGCGATCGAAAACAATAGCAGAGTTCAACTCATCAGCATTGGCTTGAACA 801449 Query 63873 ATATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATA 63931 ||||| ||| | ||| || || || |||||||| || | || || || | ||| Sbjct 801448 ATATCGTAGGT-CTCCTTGGAGATCATGGGAGAATGCAGGTCAGTCTTTGGGTTGATATA 801390 Query 63932 GTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGA 63991 | | | || | || ||||| ||| | || |||||| ||| || | || || Sbjct 801389 CTCGTACAACTGCTTACACACTTGTGAAAACTGCTTGATTGTTTGCTTATGCAAGTTGGA 801330 Query 63992 TACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 ||||| |||||||| || | ||| || || || || || Sbjct 801329 AACGGCAATTCTGGCTGCCAAAATAGCGTAGTCTGGGTG 801291 Score = 188 bits (208), Expect = 9e-43 Identities = 587/900 (65%), Gaps = 24/900 (3%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||| ||||| ||||| || |||| || | ||||| ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCC 33119 ||| || || ||||||||||||||||| ||||| |||||||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 33120 CAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATT 33179 ||| || | |||||||| || || ||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 33180 CATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGC 33239 ||| || | | || || | || | || | |||||| | |||||||| || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 33240 ATCTGTTATAATAGATCT-AACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACA 33298 || || ||||| ||| ||| ||||| || ||| | ||||| |||| Sbjct 929220 TTCGGTGATAAT-CCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACA 929162 Query 33299 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 33358 || || || || || || | ||| || ||||| | ||| | |||||| || || | Sbjct 929161 ATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATG 929102 Query 33359 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAA 33418 | || || ||||| | || | ||| || | ||| || || || || ||||| ||| | Sbjct 929101 TAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGA 929042 Query 33419 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTC 33476 |||| || || || || ||||| || |||| ||| | || || |||| || || Sbjct 929041 AGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAA--TGCATCTTC 928984 Query 33477 AT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 || || ||||| | |||||| || |||||||| || | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 |||||||| | | ||| || || ||| || | ||| ||||| ||||| | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 || |||| || || || || || || || |||||||| || || ||| | || || Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 33654 GGTAATCTGTACTTCTG--TACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 | || || ||||| | | ||| || || |||| || || || || || || ||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCA 928746 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 || ||||| || || || | | || ||| | |||| | ||| | || | Sbjct 928745 GATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCAT----TGTCATTTAA 928690 Query 33772 -------TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGA 33824 ||||| |||| | || ||| | || | ||| || | ||||||||||| Sbjct 928689 CTTGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGA 928630 Query 33825 TGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAA 33884 ||||| || ||||| ||||| | |||||| || | |||| |||||| || | |||||| Sbjct 928629 AGCCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622947129918440