Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq8 114 1e-20 seq3 105 6e-18 >seq8 Length=1028784 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || ||||||| | || || || || ||||| || || | || ||| | || | ||||| Sbjct 325486 CACAATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATC 325545 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | ||||| ||||| || || ||||| || ||||| || Sbjct 325546 CTCTGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGA 325605 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || |||||| | |||| || || |||||| | ||||| | |||| | | |||||| Sbjct 325606 CCAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTA 325665 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| ||||||||| | ||| | ||| ||||| | ||||| || Sbjct 325666 CAACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGG 325716 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||||||| | ||||| | ||| | || || Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | ||||| ||||| || || ||||| || || || || ||| Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | |||| || || |||||| | ||||| | |||| | | | | ||||| || Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAA-CATTATCAGACTACAA 326124 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||||||| | ||| |||| ||||| | ||||| || Sbjct 326125 CATTCAAAAGGAATCTACTTTACATTTGGTTTTGAGATTGAGAGGTGG 326172 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||| || | || ||| | || | || || | Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | ||||| || ||| || || ||||| || || || || ||| Sbjct 325778 GACACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 325837 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | |||| || ||| |||||| | ||||| | |||| | | | | ||||| || Sbjct 325838 CAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAA-CATTATCTGACTACAA 325896 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||| ||| | ||| |||| ||||| | ||||| || Sbjct 325897 CATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 325944 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || || |||||| | ||||| | ||| | || || Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | ||||| ||||| || || ||||| || || || || ||| Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | || | | ||| |||||| | ||||| | |||| | | |||||| ||| Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| ||| | ||| |||| ||||| | ||||| || Sbjct 326354 ATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 326400 >seq3 Length=1410883 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 119661 TTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCATAAACTCGAAAGGATTT 119720 ||||||||||| || || || || | | || ||||| | ||| || || ||||||||| Sbjct 929426 TTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTTTCCATGAAATCAAAAGGATTT 929367 Query 119721 GCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCG 119780 | | ||| | ||| |||| ||||| | | || | || |||||| ||||| ||| Sbjct 929366 GTAACATTGTACACCTTTTCGTTACCCAAAGCAACTAATAATCTATCTGCAACAAATTCG 929307 Query 119781 ATGTATTCGCACATGGAT-TGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGT 119839 | |||| ||||| | ||| | ||||| ||||||| || ||| ||||| |||| ||| Sbjct 929306 ACATATTGACACATCAAGCTGCTA-TTCATACCCAACAAAGAGACAGGTAATGCATCGGT 929248 Query 119840 AAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 || || |||||||||||| || ||||| Sbjct 929247 GAAAAATTCCTTTTCAATGGTAACGGCTTC 929218 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || |||||| | || || || || ||||| || || | || ||| | || | ||||| Sbjct 317785 AACATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCC 317726 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| || || | ||||| ||| ||| ||||| ||||| || || || ||| Sbjct 317725 TCTGACACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGAT 317666 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || |||||| | || | || || ||||| | ||||||| |||| | | |||||| Sbjct 317665 CAGCAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACTAT 317606 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| ||||| || ||||| | ||| ||||| ||||| | ||||| || Sbjct 317605 AACATCCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGAGGTGG 317556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662346150480