Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3 168 2e-36 seq7 120 8e-22 >seq3 Length=1410883 Score = 168 bits (186), Expect = 2e-36 Identities = 506/778 (65%), Gaps = 10/778 (1%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| || || | ||||| ||| ||||||||| || | | ||||| |||||||| Sbjct 801672 TTCACACATGCTTCCCCAACCTTGTTCAATGCTGGTACACCACAACCACAAATGTCTTCG 801731 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| | | |||||||| || |||||||| ||||||| |||||| | |||| Sbjct 801732 TGCTTCTTGGTTGCCATGAAGGAAGACTCCATCGACGGTATCTATGACACGTTGAAGACG 801791 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 |||||| | |||||||||| ||| || || |||||| | ||||| ||| ||||| || Sbjct 801792 TGTGCTTTGATTTCCAAGAGTGCTGGTGGTATTGGTTTGCACATCCATAATATTCGTTCA 801851 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 | |||||| ||| || || ||| || || | |||||||| |||| Sbjct 801852 ACGGGTGCCTACATTGCCGGAACCAACGGTACCTCCAACGGTATTATTCCCATGGTTCGC 801911 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || ||| |||| || || | ||||| || || |||||| || | || || ||| Sbjct 801912 GTCTTTAACAACACAGCTCGTTACGTGGATCAAGGTGGAAACAAAAGACCTGGTGCCTTT 801971 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA-AAA 363905 ||| |||| |||| || ||||| ||||||||||| || |||| | |||| || Sbjct 801972 GCTTTGTACATCGAACCATGGCATGCAGATATTTTTGATTTCGTTGACATTAGGAAGAAT 802031 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || || || ||| | || | || | || || | ||| | |||| Sbjct 802032 CAC-GGTAAGGAAGAAAACAGAGCCAGAGACTTATTTCCAGCTTTGTGGATCCCTGATTT 802090 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 || ||||| | || ||| | ||| | ||| | | |||| ||| | ||| ||| Sbjct 802091 GTTCATGAAAAGAGTAGAGCAAAATAAAGAATGGACTTTGTTTTCCCCCAATGAAGCTCC 802150 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 ||| | | || || || || || | | | | |||||||| || ||| | Sbjct 802151 AGGCTTGGCTGACAAATTCGGCGATGAGTTCGAAGAGTTGTACGAAAAATACGAA----A 802206 Query 364086 GGGAAAGGCTCGTAAGACA----ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATT 364141 | |||| | | |||||| | || |||||| |||||| ||| ||| | || Sbjct 802207 GAGAAAACCGTGGAAGACAGACCGTCAAGGCTCAGAAGTTATGGTATGCTATCTTAGAGG 802266 Query 364142 CGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCA 364201 | || | |||||||| || || | ||| | || |||||| | || ||| ||| | | Sbjct 802267 CTCAAACAGAGACAGGTACTCCATTCATGCTTTATAAAGATGCATGTAACAAGAAGACTA 802326 Query 364202 ACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACA 364261 |||| || | | |||| ||| | ||| | ||| ||||||| |||||||| Sbjct 802327 ACCAAAAGAATTTGGGTATTATTAAATCATCCAATTTGTGTTGCGAGATTGTTGAATACT 802386 Query 364262 CCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT 364319 | ||||| || ||| ||| ||||||||| | || || || | | || || ||||| Sbjct 802387 CTGCTCCAGATGAGGTTGCTGTATGTAACTTGGCATCTATATCCTTGCCTGCATTTGT 802444 >seq7 Length=1027266 Score = 120 bits (132), Expect = 8e-22 Identities = 278/419 (66%), Gaps = 0/419 (0%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 || || ||||| | || || ||||||||||||| ||||| ||||| ||||| ||| Sbjct 251678 GTGCCTATGCTCAGGGTTTTCAACAATACTGCGAGATACGTTGACCAAGGTGGGAATAAG 251737 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 | ||| || |||||||| ||| | ||||| ||| ||||||||||| ||| | Sbjct 251738 AGACCAGGCGCTTTTGCTATTTATTTAGAGCCATGGCATAGTGATATTTTTGAATTTTTA 251797 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | | |||| ||||| || || || | || || ||| |||| |||| | Sbjct 251798 GAATTGAAAAGAAACCATGGAAAGGAAGAGATGAGAGCTCGCGATTTGTTTTATGGTTTA 251857 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011 ||| | | || | ||| ||||| | || | | | |||||||||||| | || | Sbjct 251858 TGGATACCCGATCTTTTCATGAAAAGGGTAAAAGAAAATAAGAATTGGTCCTTGTTCTCT 251917 Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAA 364071 ||| | | ||| ||| | || || || || || || | ||||| || || Sbjct 251918 CCAGATGTGGCTCCCGGTTTATCTGAAACATACGGAGATGATTTTGTTGAAAAGTATGAG 251977 Query 364072 AAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCC 364131 || |||||| || || ||| | |||| || || |||||||||||| ||||| Sbjct 251978 AAATATGAAAGCGAAGGCTTGGCAGTGAGGACAGTTAGTGCTCAGAAGCTATGGATTGCC 252037 Query 364132 ATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAA 364190 || |||| || || ||||| || ||| || |||||| | ||||||||| | || || Sbjct 252038 ATATTGGAGTCCCAAATTGAAACGGGAGTTCCTTATATGCTTTACAAAGATGCTTGTAA 252096 Score = 98.7 bits (108), Expect = 3e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 111344 TTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGA 111403 || |||||| ||| || | || | | |||||| || ||||||||| ||||||| Sbjct 664638 TTCGAAGGGGATTATCCACGAGTTATTATGGTTTGTTGCAGGAAGTACAGATGCAAAGTT 664579 Query 111404 ACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTC 111463 | | | |||| |||||| |||||||| || || |||||| | || | ||| ||||| Sbjct 664578 ATTAAGTGAAAAAGGTGTAAAGATTTGGGAAGGTAACGGATCAAGAGAATATCTCGATTC 664519 Query 111464 AGTTGGTCTTGTCGACAACGAA-GAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGC 111522 ||||| ||| | | | | ||||||||||| || || || || || ||||| |||| Sbjct 664518 TCTTGGT-TTGACCAAGAGGCGTGAAGGTGATCTTGGTCCTGTCTATGGGTTTCAGTGGC 664460 Query 111523 GCCACTTTGGTGC 111535 ||||||| ||||| Sbjct 664459 GCCACTTCGGTGC 664447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353449707038