Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq8 134 9e-27
seq3 114 9e-21
>seq8
Length=1028784
Score = 134 bits (148), Expect = 9e-27
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| |||||||| | |||| ||||||||||| ||||| || |
Sbjct 326402 TACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGG 326343
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | | |||| || |||||||| |||||||| |||| | |||||| || | |
Sbjct 326342 ACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTG 326283
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| || || || || ||| || || | || |||||| | ||||
Sbjct 326282 GGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAA 326223
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || ||||| || ||||| || || ||||| || |||||
Sbjct 326222 CTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174
Score = 129 bits (142), Expect = 4e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| |||||||| | |||| ||||||||||| ||||| ||||
Sbjct 325946 TACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAG 325887
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || | |||| ||||||||||| ||||| || |||| | |||||| || | |
Sbjct 325886 ATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTG 325827
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| || || |||||| ||| || || | || || || | || |
Sbjct 325826 GGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGA 325767
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| ||||| ||||| || ||||| ||||| || || ||||| || |||||
Sbjct 325766 CCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
||||||||||| || | ||| |||||||| | |||| ||||||||||||||||| ||
Sbjct 326631 TTACCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCC 326572
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
||||| | |||| || |||||||| || || || || | | ||| || || |
Sbjct 326571 GACAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGT 326512
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|| | ||||| || || || || ||| ||||| | | ||| || |||
Sbjct 326511 GGAATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCA 326452
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || ||||||||||| || ||||| || || ||||| || |||||
Sbjct 326451 ACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| |||||||| | ||| ||||||||||| ||||| || |
Sbjct 326174 TACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTG 326115
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || | |||| ||||||||||| || || || || | | |||||| || | |
Sbjct 326114 ATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTG 326055
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| || || || || ||| || || | | ||| || ||||
Sbjct 326054 GGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAA 325995
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| || || || ||||| || ||||| || || ||||| || |||||
Sbjct 325994 CTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || ||||| | ||| |||||||| || ||||| || |
Sbjct 325718 TACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGG 325659
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | | |||| || |||||||| || || || || | | ||| || || | |
Sbjct 325658 ACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAG 325599
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
| | ||||| || || || || ||| || || | || || || ||| |
Sbjct 325598 GAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGA 325539
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || |||||||| ||||| || || || || ||||| || |||||
Sbjct 325538 CCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490
>seq3
Length=1410883
Score = 114 bits (126), Expect = 9e-21
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| |||||||| | || ||||||||| || || || |||||
Sbjct 317555 ACCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGA 317614
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
||| | | || || || ||||| || || || |||| | ||| ||||| | ||
Sbjct 317615 CAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGG 317674
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| ||||||| ||| ||||| | | ||| || ||| ||
Sbjct 317675 AATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGAC 317734
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||||| |||||||| ||||| || || || || ||||| || ||||||||
Sbjct 317735 CTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947163260479
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |