Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 298 7e-76 >seq3 Length=1410883 Score = 298 bits (330), Expect = 7e-76 Identities = 779/1174 (66%), Gaps = 52/1174 (4%) Strand=Plus/Minus Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620 || || || || |||| ||||| ||||| | | | || ||||| |||||| | ||||| Sbjct 802627 ATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGAT 802568 Query 62621 ATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TG 62677 | | |||||||||| |||||||||||| || || ||| | || | || | || Sbjct 802567 CTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTG 802508 Query 62678 ACAA--TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC---------CAT 62726 || |||||| | ||| | ||||| ||||| | | | ||| Sbjct 802507 ACGGCTTTACTT-----ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCAT 802453 Query 62727 CTATT---ACAAA--CATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATT 62781 | | ||||| || | ||| | | |||||||| ||||| || || ||||||| Sbjct 802452 CACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACATACAGCAACCTCATC 802395 Query 62782 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 | | | | |||| | ||||| || | ||| | || || | || ||||| Sbjct 802394 TGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATT 802335 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 | ||| ||| |||| |||||||| ||||| |||||||| |||||||||||||| || || Sbjct 802334 CTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTC 802275 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATC 62960 | |||| |||| || || | ||| | | || ||||||| | | | ||| | Sbjct 802274 TGTTTGAGCCTCTAAGATAGCATACCATAACTTCT-GAGCCTTGAC----GGTCTGTCTT 802220 Query 62961 TC----TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63016 | ||||||||||||||| | ||||| ||||||||| || || | ||| Sbjct 802219 CCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAAT---TTG 802163 Query 63017 TC---CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 || || || ||| ||||| || | | ||| | ||| ||| | | || ||| Sbjct 802162 TCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTACT 802103 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63133 | |||||| || | |||||| ||||| | |||| ||||| ||||||| ||| | ||| Sbjct 802102 CTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCT 802043 Query 63134 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63193 || || || |||||| ||| || | ||| | | |||||| | |||||| ||||| Sbjct 802042 TCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCG 801983 Query 63194 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63253 | ||| | || | | ||||| | ||||||||| || ||||| | ||| | ||| ||| Sbjct 801982 ATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTG 801923 Query 63254 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATA 63313 || ||| | || | | ||| ||||||||||| ||||| ||||| ||||| || | || Sbjct 801922 TTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATG 801863 Query 63314 TAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 ||| || | | |||||||||| || | ||| || || || || | || || Sbjct 801862 TAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAA 801803 Query 63374 ATTAATGCGCATCGT-TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 || || || || ||| || ||||| |||||||| || || || || ||| ||||| Sbjct 801802 ATCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGC 801744 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 63492 || | || || ||||||||| | | || || ||||| || ||||| || || Sbjct 801743 AACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGA 801684 Query 63493 AGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGC---TGAGTCTA 63548 ||| || || || || ||| ||| | ||| |||||| ||||||||| | || | | Sbjct 801683 AGCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCGTGGG---A 801628 Query 63549 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 |||| | |||||| || | || || | ||| | || ||| |||||||| || | | Sbjct 801627 TATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGGCAA 801568 Query 63609 TCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 ||| || | ||||| ||||| ||| | || || || || ||||| || ||||||| Sbjct 801567 CCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTAGTTGT 801508 Query 63669 ATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 | ||||| || ||| ||| |||| | ||||| Sbjct 801507 AGTTGAAGTCGCGATCGAAAACAATAGCAGAGTT 801474 Score = 212 bits (234), Expect = 8e-50 Identities = 592/900 (66%), Gaps = 24/900 (3%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| ||||| ||||| || |||| || | ||||| ||||| || |||||||| | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCC 32476 || || || |||||||||||||| || ||||| |||||||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 32477 CAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATT 32536 ||| || | ||||||||||| |||||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 32537 CATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 32596 ||| || | | || || | || | || | |||||| | |||||| | || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 32597 GTCTGTTATAATAGATCTTA-CTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACA 32655 || || ||||| ||| | | ||||| || ||| | ||||| |||| Sbjct 929220 TTCGGTGATAATCC-TCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACA 929162 Query 32656 TCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACG 32715 || || || || || |||| ||| || ||||| | ||| |||||||| || || | Sbjct 929161 ATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATG 929102 Query 32716 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAA 32775 | || || ||||| | || | ||| || | ||| || || || |||||||| ||| | Sbjct 929101 TAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGA 929042 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAACCGGCGCTGTC 32833 ||||||| || || || || || || |||| ||| | || || |||| || || Sbjct 929041 AGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAAT--GCATCTTC 928984 Query 32834 AT-GT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 || || ||||| | |||||| || |||||||| || | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 |||||||| | | ||| || || ||| || | ||| ||||||||||| | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 || |||| || || || || || || ||||||||||| || |||||| | || || Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 33011 GGTAATCTGTACTTCTG--TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 | || || ||||| | | ||| || || | || || || || || || || ||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCA 928746 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 || ||||| || || || | | || ||| | |||| | ||| | || | Sbjct 928745 GATGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCAT----TGTCATTTAA 928690 Query 33129 -------TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGA 33181 ||||| |||| | || ||| | || | ||| || | ||||||||||| Sbjct 928689 CTTGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGA 928630 Query 33182 TGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 ||||| || ||||| ||||| | |||||| || |||||| |||||||| | |||||| Sbjct 928629 AGCCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631928716400