Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8 149 5e-31 seq3 98.7 9e-16 >seq8 Length=1028784 Score = 149 bits (164), Expect = 5e-31 Identities = 175/235 (74%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | || || | ||||| ||||| ||| Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| || || || ||| || ||| || || ||||| |||||||| |||| Sbjct 326462 GACACTATTGA--CAATGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACC 326519 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || || | ||||| || || |||||||| ||||| | | | || || || |||| Sbjct 326520 AGCAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACA 326579 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||||||| |||||||| ||||||| || | ||| ||||||| || || || Sbjct 326580 ATATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGGTTAAGAGGTGGTAACTA 326634 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||||||||||| ||| | ||||| | ||||| ||||| ||| Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || |||||||| | ||| || ||| || || ||||| || ||||| |||||| Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || |||||||| |||||||| ||||| | | || || ||| ||||| Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| |||||||| ||||||| || | || | ||||| || Sbjct 326354 ATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 326400 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| ||||| |||| || | || || ||||| || Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||||| || || ||||| || ||||| |||||| Sbjct 325778 GACACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 325837 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| ||||| |||||||||||||| | | || | || ||||| Sbjct 325838 CAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACTACAAC 325897 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| |||||||| ||||||| || | || | ||||| || Sbjct 325898 ATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 325944 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || ||| | ||||| | ||||| ||||| ||| Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| || ||||| |||||| Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | ||||| || || |||||||||||||| | | || | || ||||| Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAACATTATCAGACTACAAC 326125 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||| ||||| || ||||||| || | || | ||||| || Sbjct 326126 ATTCAAAAGGAATCTACTTTACATTTGGTTTTGAGATTGAGAGGTGG 326172 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| || || |||||||| || ||||| | || || | || || || || Sbjct 325487 ACAATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCC 325546 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||||| | ||| || ||| || || ||||| ||||| || ||| Sbjct 325547 TCTGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGAC 325606 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || | | ||||| || || |||||||| ||||| | | || || ||| ||| Sbjct 325607 CAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 325666 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || ||||| ||||| || |||||||||| | || | ||||| || Sbjct 325667 AACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGG 325716 >seq3 Length=1410883 Score = 98.7 bits (108), Expect = 9e-16 Identities = 171/243 (70%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 24986 ACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGA 25045 |||| | ||||| ||||||| || || |||||||| || ||||| | || || | || Sbjct 317794 ACAAGCCTGAACA-TGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGA 317736 Query 25046 AGTGGAGTCGTCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGG 25102 || || || ||||||||||| || || || ||| |||||| ||| ||||| ||||| Sbjct 317735 GGTCGAATCCTCTGACACTATTGA--CAATGTCAAGTCAAAAATTCAA-GACAAGGAAGG 317679 Query 25103 GATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCAC 25162 ||||||||||| || || | | || || || || ||||| || ||||||| | || Sbjct 317678 TATTCCACCTGATCAGCAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAAC 317619 Query 25163 TGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGG 25222 || || || || || ||||| || || || | ||||| || | || | ||||| Sbjct 317618 CTTGTCTGACTATAACATCCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGAGG 317559 Query 25223 AGG 25225 || Sbjct 317558 TGG 317556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327952469335