Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq3 251 8e-62
>seq3
Length=1410883
Score = 251 bits (278), Expect = 8e-62
Identities = 546/803 (68%), Gaps = 27/803 (3%)
Strand=Plus/Minus
Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977
||||||||||| || |||||||| | || ||| ||||||| | |||||| || |
Sbjct 929330 AATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAAC 929271
Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037
| | ||||||| || ||||| || || || || || || ||||||||| | |
Sbjct 929270 AAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATA 929211
Query 93038 ATT-TCT-----ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091
|| ||| ||| ||| | || |||| ||||| | || | | ||| ||||
Sbjct 929210 ATCCTCTCAACAATT--TCTGC-ATCTGGTCTGTTTTGCAA---ATGAGAGAACAATAAG 929157
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| |||||||| |||||||||||||| |||| | ||||| || || |||||| | |
Sbjct 929156 CAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGA 929097
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
||||| | || |||| ||||| | ||| || || || ||||| |||| || ||
Sbjct 929096 CCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAA 929037
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271
||||| || || || || || || |||| |||||| | || ||| | | | ||
Sbjct 929036 ATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTG 928977
Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTT 93330
|||||| | |||||||| || || || ||||| ||||| || | |||| || || || ||
Sbjct 928976 ATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGG-AATGTTGTCAATTGCATT 928918
Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390
||| | | || ||| | | ||| || || ||||| || || | ||| || |
Sbjct 928917 AAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGT 928858
Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450
||| || |||| ||||||||| ||||| ||||| || || ||| | ||||| | |
Sbjct 928857 TTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAAC 928798
Query 93451 CTGCACTTC--TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
|| ||||| ||||||| |||| || | || || ||||| |||||||| |||||
Sbjct 928797 TTGAACTTCAGCTGAGAAA--TTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCA 928740
Query 93509 GCaaaaaaaGCCAATATATGCTT--TATAAAATGTTTCTCATCATCTTTAAGCTTATC-- 93564
||||| ||||| | | || ||| || ||| | |||| || || | ||| ||
Sbjct 928739 GCAAAGAAAGCTA--AGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCT 928682
Query 93565 -CCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622
||| || | || ||| ||| || | ||| || |||||||||| || || ||
Sbjct 928681 TCCAGTCATGCAAGTCCTTACCCAAG-TCAATTTCCTCAGCAGTCCAAAATGAAGCCTCA 928623
Query 93623 GCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTA 93682
|||||||||||||| | ||| || || |||||| |||||||| | ||||||||| |
Sbjct 928622 GCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAAACGACGA 928563
Query 93683 GGGTTATCTTTTAGTAACGGCTC 93705
| || || | | ||| |||||
Sbjct 928562 GCATTTTCAATCAATAATGGCTC 928540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860737353160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |