Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3 251 8e-62 >seq3 Length=1410883 Score = 251 bits (278), Expect = 8e-62 Identities = 546/803 (68%), Gaps = 27/803 (3%) Strand=Plus/Minus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 ||||||||||| || |||||||| | || ||| ||||||| | |||||| || | Sbjct 929330 AATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAAC 929271 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | ||||||| || ||||| || || || || || || ||||||||| | | Sbjct 929270 AAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATA 929211 Query 93038 ATT-TCT-----ATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAG 93091 || ||| ||| ||| | || |||| ||||| | || | | ||| |||| Sbjct 929210 ATCCTCTCAACAATT--TCTGC-ATCTGGTCTGTTTTGCAA---ATGAGAGAACAATAAG 929157 Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || |||||||| |||||||||||||| |||| | ||||| || || |||||| | | Sbjct 929156 CAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGA 929097 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || |||| ||||| | ||| || || || ||||| |||| || || Sbjct 929096 CCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAA 929037 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTG 93271 ||||| || || || || || || |||| |||||| | || ||| | | | || Sbjct 929036 ATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTG 928977 Query 93272 ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTT-TCGATAGCGTT 93330 |||||| | |||||||| || || || ||||| ||||| || | |||| || || || || Sbjct 928976 ATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGG-AATGTTGTCAATTGCATT 928918 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 ||| | | || ||| | | ||| || || ||||| || || | ||| || | Sbjct 928917 AAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGT 928858 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 ||| || |||| ||||||||| ||||| ||||| || || ||| | ||||| | | Sbjct 928857 TTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAAC 928798 Query 93451 CTGCACTTC--TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 || ||||| ||||||| |||| || | || || ||||| |||||||| ||||| Sbjct 928797 TTGAACTTCAGCTGAGAAA--TTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCA 928740 Query 93509 GCaaaaaaaGCCAATATATGCTT--TATAAAATGTTTCTCATCATCTTTAAGCTTATC-- 93564 ||||| ||||| | | || ||| || ||| | |||| || || | ||| || Sbjct 928739 GCAAAGAAAGCTA--AGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCT 928682 Query 93565 -CCAATC-GGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCT 93622 ||| || | || ||| ||| || | ||| || |||||||||| || || || Sbjct 928681 TCCAGTCATGCAAGTCCTTACCCAAG-TCAATTTCCTCAGCAGTCCAAAATGAAGCCTCA 928623 Query 93623 GCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTA 93682 |||||||||||||| | ||| || || |||||| |||||||| | ||||||||| | Sbjct 928622 GCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAAACGACGA 928563 Query 93683 GGGTTATCTTTTAGTAACGGCTC 93705 | || || | | ||| ||||| Sbjct 928562 GCATTTTCAATCAATAATGGCTC 928540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860737353160