Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq8 163 5e-35
seq3 159 6e-34
>seq8
Length=1028784
Score = 163 bits (180), Expect = 5e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| ||||| |||| ||||| || ||||| ||||| || || || | ||| || || ||
Sbjct 325930 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTC 325871
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| || || |||||||| || | |||||||||||| ||||| || |||||||| ||
Sbjct 325870 TTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 325811
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||| || ||||||| ||||| ||||| | || || || || ||||| |||||
Sbjct 325810 TTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGT 325751
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||||||||| || |||||
Sbjct 325750 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
Score = 163 bits (180), Expect = 5e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| ||||| |||| || || || ||||| ||||| || || || | ||| || || ||
Sbjct 326158 CAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCGTC 326099
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
|||||| || || || ||||| || | |||||||||||| ||||| || |||||||| ||
Sbjct 326098 TTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 326039
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| ||||||| || || ||||| | || || |||||||| ||||| ||
Sbjct 326038 TTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGATTGT 325979
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||||| || |||||
Sbjct 325978 TTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946
Score = 163 bits (180), Expect = 5e-35
Identities = 164/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| ||||| |||| ||||| || ||||| ||||| || ||||| | || || || ||
Sbjct 326386 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCGTC 326327
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || || || ||||| || || | |||||||||||| ||||| || |||||||| ||
Sbjct 326326 TTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 326267
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| ||||||| ||||| || || | || || |||||||| ||||| ||
Sbjct 326266 TTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGATTGT 326207
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||||| || |||||
Sbjct 326206 TTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174
Score = 156 bits (172), Expect = 8e-33
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| || || |||| || || || ||||||||||| || ||||| | || || || ||
Sbjct 325702 CAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTC 325643
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || || || || ||||| || | |||||| ||||| || ||||| |||||||| ||
Sbjct 325642 TTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATC 325583
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| ||||||| ||||||||||| | ||||| || |||||||| || ||
Sbjct 325582 TTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAATAGT 325523
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467
|| || || | ||||| ||||| || |||||| ||||
Sbjct 325522 CTTACCTGTTAAAGTCTTAACGAAGATTTGCATTGTGCT 325484
Score = 145 bits (160), Expect = 1e-29
Identities = 160/213 (75%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| ||||| |||| ||||| || ||||| || || || || || | ||| || || ||
Sbjct 326614 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTC 326555
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| || || || || ||||| || | ||||| ||||| |||||||| |||||||| ||
Sbjct 326554 TTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATC 326495
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
||| ||||| |||||| || || ||||| | || || |||||||| || || ||
Sbjct 326494 TTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGT 326435
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| || | ||||||||||| || |||||
Sbjct 326434 TTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402
>seq3
Length=1410883
Score = 159 bits (176), Expect = 6e-34
Identities = 163/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308
||| ||||| || | || ||||| |||||||||||||| || || | || || |||||
Sbjct 317570 CAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATC 317629
Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368
||| ||||| || || ||||| || | |||||| || || |||||||| |||||||||||
Sbjct 317630 TTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTTGTC 317689
Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428
|||||| |||| |||||| || || ||||| | ||||| || || ||||| || ||
Sbjct 317690 TTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAATAGT 317749
Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || || | ||||| ||||| || |||||
Sbjct 317750 CTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921622296317480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |