Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8 163 5e-35 seq3 159 6e-34 >seq8 Length=1028784 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| ||||| || ||||| ||||| || || || | ||| || || || Sbjct 325930 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTC 325871 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || |||||||| || | |||||||||||| ||||| || |||||||| || Sbjct 325870 TTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 325811 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| || ||||||| ||||| ||||| | || || || || ||||| ||||| Sbjct 325810 TTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGT 325751 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||||||||| || ||||| Sbjct 325750 CTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| || || || ||||| ||||| || || || | ||| || || || Sbjct 326158 CAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCGTC 326099 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| || || || ||||| || | |||||||||||| ||||| || |||||||| || Sbjct 326098 TTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 326039 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| ||||||| || || ||||| | || || |||||||| ||||| || Sbjct 326038 TTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGATTGT 325979 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||||| || ||||| Sbjct 325978 TTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 Score = 163 bits (180), Expect = 5e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| ||||| || ||||| ||||| || ||||| | || || || || Sbjct 326386 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCGTC 326327 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || || || ||||| || || | |||||||||||| ||||| || |||||||| || Sbjct 326326 TTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATC 326267 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| ||||||| ||||| || || | || || |||||||| ||||| || Sbjct 326266 TTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGATTGT 326207 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||||| || ||||| Sbjct 326206 TTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 156 bits (172), Expect = 8e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || || |||| || || || ||||||||||| || ||||| | || || || || Sbjct 325702 CAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCGTC 325643 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || || || || ||||| || | |||||| ||||| || ||||| |||||||| || Sbjct 325642 TTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATC 325583 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| ||||||| ||||||||||| | ||||| || |||||||| || || Sbjct 325582 TTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAATAGT 325523 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || || | ||||| ||||| || |||||| |||| Sbjct 325522 CTTACCTGTTAAAGTCTTAACGAAGATTTGCATTGTGCT 325484 Score = 145 bits (160), Expect = 1e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| ||||| || ||||| || || || || || | ||| || || || Sbjct 326614 CAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTC 326555 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || || || || ||||| || | ||||| ||||| |||||||| |||||||| || Sbjct 326554 TTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATC 326495 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| |||||| || || ||||| | || || |||||||| || || || Sbjct 326494 TTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGT 326435 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || | ||||||||||| || ||||| Sbjct 326434 TTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 >seq3 Length=1410883 Score = 159 bits (176), Expect = 6e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || | || ||||| |||||||||||||| || || | || || ||||| Sbjct 317570 CAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCATC 317629 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| ||||| || || ||||| || | |||||| || || |||||||| ||||||||||| Sbjct 317630 TTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTTGTC 317689 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 |||||| |||| |||||| || || ||||| | ||||| || || ||||| || || Sbjct 317690 TTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAATAGT 317749 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | ||||| ||||| || ||||| Sbjct 317750 CTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622296317480