Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 113 1e-19 seq6 89.7 1e-12 >seq8 Length=1028784 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||||| | || | ||||||||| |||||||| || || || Sbjct 326365 TTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAA 326306 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| | | ||||| |||||| ||||| ||||| ||||| || || ||||| Sbjct 326305 GATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTT 326246 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| ||| || || ||||| | ||||| || || ||||||| ||||||||| Sbjct 326245 GTCGATAGTATCAGAAGACTCAACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGAC 326186 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 326185 GAAAATTTGCAT 326174 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | | || | ||||||||||||||||| || ||||| Sbjct 326137 TTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAA 326078 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | ||||| |||||| ||||| ||||| ||||| || || ||||| Sbjct 326077 AATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTT 326018 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || ||||| | ||||| || || || |||| ||||||||| Sbjct 326017 GTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGAC 325958 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 325957 GAAGATTTGCAT 325946 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | | || | ||||||||||||||||| || ||||| Sbjct 325909 TTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAA 325850 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | ||||| |||||| ||||| ||||| || ||||| || ||||| Sbjct 325849 AATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTTACTCTTGACGTT 325790 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||| || || || || | || || ||||| || |||| ||||||||| Sbjct 325789 GTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGAC 325730 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 325729 GAAGATTTGCAT 325718 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| ||||| ||||| | | || | |||||||| |||||||| || ||||| Sbjct 326593 TTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAA 326534 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| | || || ||| || ||||| ||||| ||||| || || || || Sbjct 326533 AATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTACTCTTGACATT 326474 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| || || || ||||| | || || || || || |||| ||||||||| Sbjct 326473 GTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGAC 326414 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 326413 GAAGATTTGCAT 326402 >seq6 Length=1052305 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 135623 TGGGTTATTTTCGATGAAGTTCACTATATCAATGATAAGTCTCGAGGTTCCGTGTGGGAA 135682 ||||| |||||||| |||||||||||||| | || |||||||| ||| ||| ||||| Sbjct 732130 TGGGTCATTTTCGACGAAGTTCACTATATGAGAGACAAGTCTCGTGGTGTCGTTTGGGAG 732071 Query 135683 GAATCGATAATTCTGATGCCGGATACGATGCGTGCTGTGTTTTTGTCAGCAACGGTTCCG 135742 || | || || || |||| |||| | | | | || ||||| || || || |||| Sbjct 732070 GAGACTATGATCTTGTTGCCTGATAAGGTCCATTACGTATTTTTATCGGCTACCATTCCC 732011 Query 135743 AACGCGGTTGAATTTTCCAAGTGGTTTTCGAAGTTGAAGAATCATCC 135789 ||||| | |||||| | ||||| || |||| | | ||||| || Sbjct 732010 AACGCCATGGAATTTGCTGAGTGGATTGTGAAGATTCACAATCAACC 731964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654263971102