Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq8 100 3e-16
seq3 93.3 4e-14
>seq8
Length=1028784
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | ||| | || ||||| |||||||||||||| || |
Sbjct 326401 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGA 326342
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| | ||||||| | || || |||||| | || | | || ||||| || ||
Sbjct 326341 CAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGG 326282
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| ||||| || ||||| || || ||| || || | |||||| | || ||
Sbjct 326281 GATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAAC 326222
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | || || ||||||||||| || ||||||||||||||
Sbjct 326221 TTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | ||| | || ||||| |||||||||||||| || |
Sbjct 325945 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGA 325886
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | ||||||| | || || ||||| |||| | | || ||||| || ||
Sbjct 325885 TAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGG 325826
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| ||||| || ||||| ||||| ||| || || | ||| || | || ||
Sbjct 325825 GATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGAC 325766
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||| || | |||||| || |||||||| || ||||| ||||||||
Sbjct 325765 CTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | ||| | || ||||| |||||||||||||| ||||
Sbjct 326173 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGA 326114
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | ||||||| | || || || || |||| | | || ||||| || ||
Sbjct 326113 TAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 326054
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| ||||| || ||||| || || ||| || || | || ||| || || ||
Sbjct 326053 GATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAAC 325994
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | ||| | || || || |||||||| || ||||| ||||||||
Sbjct 325993 TTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946
>seq3
Length=1410883
Score = 93.3 bits (102), Expect = 4e-14
Identities = 174/250 (70%), Gaps = 8/250 (3%)
Strand=Plus/Minus
Query 153999 AAATC-TTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCAC 154057
||||| |||||| |||| |||| | || ||| || || || |||||||| | | |
Sbjct 803023 AAATCCTTCAAC-AAGTATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGA 802965
Query 154058 ATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGT 154117
|| | || ||| | ||||| || |||||||||||||||| ||||| | || |
Sbjct 802964 GTAGATGTTCGAAGTGTATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGA 802905
Query 154118 TGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAA 154177
|| || |||||| || || | ||| ||||||| |||||| || ||||| |||
Sbjct 802904 CGCAGTAGGCATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATG---TT 802848
Query 154178 TT--TTAAATCTG-CCCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTG 154234
|| || ||| || |||| | |||||| | |||||| | || ||||| ||| || ||
Sbjct 802847 TTGCTTCAATGTGTCCCAGTCCCACAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTG 802788
Query 154235 CAAAACACCC 154244
||| | ||||
Sbjct 802787 CAAGAGACCC 802778
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | |||||| | || | ||| | || || || ||||| ||||| || || |
Sbjct 317555 ACCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGA 317614
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| | | ||||| | ||| || || || | || | | ||||| || || ||
Sbjct 317615 CAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGG 317674
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| ||||| || ||||| |||||| ||| ||| || | || ||| || || ||
Sbjct 317675 AATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGAC 317734
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|||| || | ||||| || || ||||| || |||||||||||||| ||
Sbjct 317735 CTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644743789960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |