Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq8 143 2e-29
seq3 129 4e-25
>seq8
Length=1028784
Score = 143 bits (158), Expect = 2e-29
Identities = 171/230 (74%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| ||||| ||||| | || || || ||||| |||||||| || |
Sbjct 325944 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCA--G 325887
Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| ||| ||| |||||||||||||||| || ||| | || || | |||||||| ||
Sbjct 325886 ATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTG 325827
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || |||||||| || |||||| || || || | || || || ||| | || |
Sbjct 325826 GGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGA 325767
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| |||||||||||||| ||||| |||| ||| || || || |||||||||
Sbjct 325766 CCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCATA 325717
Score = 131 bits (144), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| ||||| ||||| | ||||| || ||||| |||||||| || ||
Sbjct 326172 CCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTC--TG 326115
Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| ||| ||| |||||||||||||||| |||||| | ||||| | |||||||| ||
Sbjct 326114 ATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTG 326055
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || |||||||| || || || || || || | || ||||| || || |
Sbjct 326054 GGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAA 325995
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || || || ||||| || |||| ||| || || || |||||||||
Sbjct 325994 CTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 325945
Score = 122 bits (134), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| ||||| ||||| | || || || ||||| |||||||| ||| |
Sbjct 326400 CCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCG--G 326343
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| ||||||| |||||||| || || | || || | |||||||| ||
Sbjct 326342 ACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTG 326283
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| || |||||||| || || || || || || | || |||||||| | || |
Sbjct 326282 GGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAA 326223
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
| || || || || ||||| || |||| ||| || || ||||||||||||
Sbjct 326222 CTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCATA 326173
>seq3
Length=1410883
Score = 129 bits (142), Expect = 4e-25
Identities = 169/232 (73%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||||| |||||| || || ||||| | |||||| || ||||| ||||| || || |
Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCA--G 317613
Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| || |||| | ||||| || ||||| |||||| | || || | || || || ||
Sbjct 317614 ACAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTG 317673
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| |||||| || ||| | || ||||| || ||| |
Sbjct 317674 GAATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGA 317733
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| ||||||||||| || |||||||| | ||| || || ||||||||||| ||
Sbjct 317734 CCTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357391960798565
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |