Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8 131 2e-25 seq3 122 8e-23 seq7 82.4 7e-11 >seq8 Length=1028784 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| ||| | || |||||||||||||| || || ||| | |||| | Sbjct 325704 CTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCCG 325645 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || ||| | ||||||| ||||||||| || ||||| ||||| ||| Sbjct 325644 TCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTA 325585 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | |||||| || || ||||| || | |||| Sbjct 325584 TCTTGGATCTTACTCTTGA-CGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 325526 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| || || || |||||||| Sbjct 325525 AGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 |||||| || | ||| | || ||||||||||| ||||| || || | ||| || Sbjct 326617 CCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACC 326558 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 || ||||||||||| || ||| | ||||| | ||||||||| || ||||| ||||| || Sbjct 326557 GTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTT 326498 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| || || |||| || | ||||| || ||||| ||||| | ||||| Sbjct 326497 ATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAAT 326438 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||| || || || |||||||| Sbjct 326437 AGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || ||||||||||| || || || ||| | |||| | Sbjct 326388 CTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCCG 326329 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| || || | || |||| ||| ||||| || || || ||||| ||| Sbjct 326328 TCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTA 326269 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | || || |||||||| ||||| | ||| | Sbjct 326268 TCTTGGATCTTACTCTTGA-CGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGAT 326210 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||| | ||| || || ||||||||||| Sbjct 326209 TGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || ||||||||||| || || || || | ||| | Sbjct 325932 CTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCG 325873 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | || |||| ||| ||||| || || || ||||| ||| Sbjct 325872 TCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTA 325813 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||| |||| || | || | ||||||||||||||||| || | |||| Sbjct 325812 TCTTGAATTTTACTCTTGA-CGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAAT 325754 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || || || |||||||| Sbjct 325753 GGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || ||||||||||| || || || || | ||| | Sbjct 326160 CTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCG 326101 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || |||||||| || ||| | ||||||| ||| ||||| || || || ||||| ||| Sbjct 326100 TCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTA 326041 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || |||| || | || | ||||| || ||||| ||||| | ||| | Sbjct 326040 TCTTGGATCTTACTCTTGA-CGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGAT 325982 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | ||| || || || |||||||| Sbjct 325981 TGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 >seq3 Length=1410883 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||||| || || ||||||||||| ||||| || | |||| | | Sbjct 317568 CTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCCA 317627 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || ||| | || |||| |||||| || || ||||| ||||| || Sbjct 317628 TCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTTG 317687 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| |||| || | ||||| || || ||||| || | |||| Sbjct 317688 TCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAATA 317747 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| ||| || || ||||||||||| Sbjct 317748 GTCTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 124098 GGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT 124157 ||| | |||||||| ||| ||||| | | || || | |||||||||||| | Sbjct 802779 GGTCTCTTGCAGTATGACTTGTGGGACAGAAAGCCTACCGAATTGTGGGACTGGGACACA 802838 Query 124158 TTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCG 124217 || || ||| ||| | | ||| |||||| | ||||| || | || || ||||| Sbjct 802839 TTGAAGCAAAACATGGCAAAGCATGGTTTGAGAAACTCATTGCTTGTTGCTCCTATGCCT 802898 Query 124218 ACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAAT 124277 || || |||| | ||||||||||| |||||||||| ||| ||||| | |||| || Sbjct 802899 ACTGCGTCCACCTCGCAAATTTTAGGCAACAACGAATGCTTTGAGCCATACACTTCGAAC 802958 Query 124278 TTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAA 124313 | ||| | || |||| || || || || || ||| Sbjct 802959 ATCTACTCGAGAAGAGTATTGGCTGGTGAGTTCCAA 802994 >seq7 Length=1027266 Score = 82.4 bits (90), Expect = 7e-11 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAA-ACGCAA--A 123293 ||||| | |||| ||| || | | | | |||| ||||| || || || | | | | Sbjct 251684 ATGCTCAGGGTTTTCAACAATACTGCGAGATACGTTGACCAAGGTGGGAATAAGAGACCA 251743 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 ||||| | || || ||| |||| || ||||| |||| | | || |||||| | || Sbjct 251744 GGCGCTTTTGCTATTTATTTAGAGCCATGGCATAGTGATATTTTTGAATTTTTAGAATTG 251803 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTA 123413 ||| | ||| || |||||| | || ||| ||||||||||| || | ||||||| || Sbjct 251804 AAAAGAAACCATGGAAAGGAAGAGATGAGAGCTCGCGATTTGTTTTATGGTTTATGGATA 251863 Query 123414 CCCGATTTGTTTATGCGACGCGTAAAAGA 123442 |||||| | || ||| | | |||||||| Sbjct 251864 CCCGATCTTTTCATGAAAAGGGTAAAAGA 251892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003149149640