Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3 131 2e-25 seq8 95.1 1e-14 >seq3 Length=1410883 Score = 131 bits (144), Expect = 2e-25 Identities = 408/627 (65%), Gaps = 15/627 (2%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| ||||| |||||||||||||| ||| || || || || ||| |||| | Sbjct 929175 CAAATGAGAGAACAATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAA 929116 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| ||| || | || ||||| | || | || || | ||| || || | || Sbjct 929115 TTCGTTAGAGAATGTAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGC 929056 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || ||||| | ||||| || || |||||||| || || || || ||||| Sbjct 929055 AAATGAACCACTGAAGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAA 928996 Query 133056 CGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGG 133115 || |||| | |||||| | || ||||| || ||||| | |||| || || Sbjct 928995 TAATGCATCTTCATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGG 928936 Query 133116 CATCGTTTCGATGGCGTTCAACAAACGG--AGTTTCTCTTCCGAGGAACGC--ACGTAGG 133171 || | || || || || |||||| | || ||| || ||| | | |||| Sbjct 928935 AATGTTGTCAATTGCATTAAACAAAAAGTCAGCCTCTTTT----GGATCCTTGATATAGG 928880 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 | || || | || || |||| ||||| | |||||||| ||||||||| || | Sbjct 928879 TATCAATCAATAAAGAGTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCAT 928820 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 ||||||| || || || || ||||| | |||| ||| |||| || |||| Sbjct 928819 AAAAGCATTTGGCTTCTGGAACTTGAACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGT 928760 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA--TGAAATGGCGCTC 133349 |||| || || || || || || || || | | | ||||| ||||| | || Sbjct 928759 TGACAATACCATCAGATGCAGCAAAGAAAGCTAAGA--TTCTTGAAATGAAAAACCTTTC 928702 Query 133350 GTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||||| || || | || |||||| || |||||| || ||| | ||||| | Sbjct 928701 ATTGTCATTTAACTTGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGC 928642 Query 133407 GGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGG 133466 |||||||| || ||||| |||||||||||||| ||| || || |||| || || Sbjct 928641 AGTCCAAAATGAAGCCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGG 928582 Query 133467 AAAAATCACAAACCGGCGGGGGTTTTC 133493 ||| | ||||| || || | ||||| Sbjct 928581 AAACAAAACAAAACGACGAGCATTTTC 928555 >seq8 Length=1028784 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || || || || || ||| | || ||||| || | Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | |||| | |||| || |||| || || || || ||||| | ||| Sbjct 325549 TGACACCATCGACAACG--TCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGAC 325606 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || | | |||| ||| || ||||| |||| |||| | ||| | ||||||| Sbjct 325607 CAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 325666 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||||| | || | ||||| || || | |||||||| || Sbjct 325667 AACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGG 325716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || ||||| ||| | || |||||| | || Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| ||||| | || || || || || || | |||| Sbjct 325778 GACACAATCGACAACG--TCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACC 325835 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTAC 38420 |||| | | |||| ||| || ||||| | || |||| || | | | | | |||||| Sbjct 325836 AACAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACG-GCAGAACATTATCTGACTAC 325894 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||||||| | || | |||||||| || | |||||||| || Sbjct 325895 AACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 325944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || ||||| ||||| | || || ||| || | Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | |||| || |||| || || || || || || | |||| Sbjct 326006 GACACTATTGACAACG--TCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACC 326063 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTAC 38420 |||| | | |||| ||| || ||||| | || |||| || | | | | | |||||| Sbjct 326064 AACAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACG-GCAGAACATTATCAGACTAC 326122 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||||||| | || | |||||||| || | |||||||| || Sbjct 326123 AACATTCAAAAGGAATCTACTTTACATTTGGTTTTGAGATTGAGAGGTGG 326172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172743730560