Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3 259 6e-64 seq2 87.8 2e-12 seq5 82.4 9e-11 >seq3 Length=1410883 Score = 259 bits (286), Expect = 6e-64 Identities = 912/1402 (65%), Gaps = 37/1402 (3%) Strand=Plus/Plus Query 111619 ACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGA 111678 || || | ||| | || || || ||||| ||| | || ||||| ||| | |||| Sbjct 801586 ACTTGATTATGAGAGTTGCTATTGGTATTCATAGAGATGATATCCCACGGGTTATTGAGA 801645 Query 111679 CATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTG 111738 | ||| | | ||||| | | |||| || || | |||||| | ||||| |||| Sbjct 801646 CTTACAATTACATGTCTCAAAGATACTTCACACATGCTTCCCCAACCTTGTTCAATGCTG 801705 Query 111739 GTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCA 111798 |||||||| ||| |||||||| || ||| | |||| | ||||| || || ||| Sbjct 801706 GTACACCACAACCACAAATGTCTTCGTGCTTCTTGGTTGCCATGAAGGAAGACTCCATCG 801765 Query 111799 ATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCG 111858 | || || || | ||| | | ||||| || || ||| | ||||||||||| | Sbjct 801766 ACGGTATCTATGACACGTTGAAGACGTGTGCTTTGATTTCCAAGAGTGCTGGTGGTATTG 801825 Query 111859 GGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-ATTAGAGGTACAAATGGTCAA 111917 | ||||||||||| || | | | ||| || | ||| || || || ||| Sbjct 801826 GTTTGCACATCCATAATATTCGTTC-AACGGGTGCCTACATTGCCGGAACCAACGGTACC 801884 Query 111918 TCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAA 111977 || | ||||||||||| ||| ||||||| |||||| |||||| || || || | ||| Sbjct 801885 TCCAACGGTATTATTCCCATGGTTCGCGTCTTTAACAACACAGCTCGTTACGTGGATCAA 801944 Query 111978 GCTGGGCGTCGCAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATAT 112033 | ||| | ||| || | | || | || | || |||||||| || ||||| Sbjct 801945 GGTGGAAA-CAAAAGACCTGGTGCCTTTGCTTTGTACATCGAACCATGGCATGCAGATAT 802003 Query 112034 CATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATC 112092 | || ||| |||| | | || || ||| | || || | | ||| | || Sbjct 802004 TTTTGATTTCGTTGACATTAGGAAGAATCACGGTAAGGAAGAAAA-CAGAGCCAGAGACT 802062 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | || | ||| | ||||| || ||| | |||||||| ||||| ||| | | | | | Sbjct 802063 TATTTCCAGCTTTGTGGATCCCTGATTTGTTCATGAAAAGAGTAGAGCAAAATAAAGAAT 802122 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 || || | |||| || | | || || || | | || | || || ||||| | Sbjct 802123 GGACTTTGTTTTCCCCCAATGAAGCTCCAGGCTTGGCTGACAAATTCGGCGATGAGTTCG 802182 Query 112213 AAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCG 112272 ||| | ||| ||| ||||| ||||| || | | ||| || ||| | | Sbjct 802183 AAGAGTTGTACGAAAAATACGAAAGAGAAAACCGTGGAAGACAGACCGTCAAGGCT-CAG 802241 Query 112273 ATGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 | || ||| | ||||| | || ||||||| ||||| ||||| |||| |||||||| Sbjct 802242 AAGTTATGGTATGCTATCTTAGAGGCTCAAACAGAGACAGGTACTCCATTCATGCTTTAT 802301 Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 ||||| || |||||| | |||| ||| ||||||||||||||| | || || ||||| Sbjct 802302 AAAGATGCATGTAACAAGAAGACTAACCAAAAGAATTTGGGTATTATTAAATCATCCAAT 802361 Query 112392 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 | ||| || || | |||| | | ||||||| ||||| |||||| | ||| Sbjct 802362 TTGTGTTGCGAGATTGTTGAATACTCTGCTCCAGATGAGGTTGCTGTATGTAACTTGGCA 802421 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA------TTTGATTATGAA 112505 || || | | || | ||| || || | | || | | ||| |||| Sbjct 802422 TCTATATCCTTGCCTGCATTTGTCGAGAGTGATGCTACTTCAACCTGGTATAATTTTGAA 802481 Query 112506 AAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAAT 112565 ||||| ||||| | | ||| | ||||| ||| | |||||| | ||||| | ||| Sbjct 802482 AAACTTCACGATATAAGTAAAGCCGTCACTCGTAACTTGAACAGAATCATTGACCGTAAT 802541 Query 112566 TTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 112624 | ||| |||||| ||| || | |||||| ||||||||| | ||||||| | |||| Sbjct 802542 TATTATCCCGTTCCAGAA-GCAAAGAGATCTAACATGAGACACAGACCAATTGCTGTCGG 802600 Query 112625 TGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGACGAAG 112683 |||||||||||| || |||| ||||| ||||| | | |||| ||||| | |||| Sbjct 802601 TGTCCAAGGTCTAGCCGATGCCTTCATGGCTTTGAGGTTGC-CATTCGATTCTCAAGAAG 802659 Query 112684 CGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTT 112743 | | |||| | || | || ||||||||||| || || | ||| | ||||| Sbjct 802660 CCAGGGAATTGAACATTCAAATCTTTGAGACAATCTACCATGGTGCTGTGGAGGCATCCA 802719 Query 112744 CGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAG 112803 ||||||||||| || || || |||| || |||| || || || ||||| || ||| Sbjct 802720 TTGAGTTGGCAGAAGTCGAAGGGACATACGAGACCTACGAAGGCTCCCCAGCATC-GAAG 802778 Query 112804 GGGTGCTT-CAATTTGATATGTGGGAAGGTGAG---ACCAAGCTTCACTACGACTGGGAC 112859 || ||| || | ||| ||||||| | || ||| | | | ||||||||| Sbjct 802779 GGTCTCTTGCAGTATGACTTGTGGGACAGAAAGCCTACCGAATT---GTGGGACTGGGAC 802835 Query 112860 GCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACC 112915 | | ||| || ||| ||| || | ||| | | ||| || || | | || || Sbjct 802836 ACATTGAAGCAAAACATGGCAA--AGCATGGTTTGAGAAAC--TCATTGCTTGTTGCTCC 802891 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||| || || |||||| | ||||| || || || || ||||||||||| || ||||| Sbjct 802892 TATGCCTACTGCGTCCACCTCGCAAATTTTAGGCAACAACGAATGCTTTGAGCCATACAC 802951 Query 112976 GACGAACATCTATCTGAGAAGA 112997 |||||||||| ||||||| Sbjct 802952 TTCGAACATCTACTCGAGAAGA 802973 >seq2 Length=1812747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 218/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 15970 TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG 16029 |||||||||| |||||||| |||||| || || | ||| ||| | || ||||| | Sbjct 194379 TATCAAAACCGTCCATCTCAACCAAAAGTTGATTCAAAGTGGTTTCTCTCTCGTCATTAG 194320 Query 16030 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 16080 | ||||| |||| | | || | || || | ||||| || ||||| | Sbjct 194319 C------ACCACTAGCATTTCCTTTGGAACGCTGTTTACCAATAGCATCGATTTCATCCA 194266 Query 16081 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 16140 || || ||| | || |||||| ||||| || ||| | ||| || ||||| | Sbjct 194265 CAAAAACAATGGAAGGGGCATTTTCTCGAGCAGTTTTAAACAAATCTCGAACACGAGAAG 194206 Query 16141 CGCCCACACCAACAAACATCTCCACAAAGTTTG-CGGCGGAACATTGGATGAAGGGGACA 16199 |||||||||||||||||||||| ||||| | | | | |||| | | || || ||| Sbjct 194205 CGCCCACACCAACAAACATCTCAACAAACTCGGACCCAGAAACAGAGTA-AAATGGAACA 194147 Query 16200 TTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCG 16259 | ||||| ||| | || || | | ||||||||| || |||||| || | Sbjct 194146 CCTGCCTCACCAGCAGTAGCCTTTGCTATCAAAGTCTTACCTGTTCCTGGCGGGCCAGAT 194087 Query 16260 AGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 | | ||||||| ||||||||| || ||| Sbjct 194086 AATATTGCACCTCTTGGAATCTTCGCACCA 194057 >seq5 Length=1138348 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 163540 GGGTGTCTATGGGCGTGTTGCGCCACGATCTGGTCTCGCTGTGAAACACGGTATCCAAGT 163599 |||| ||| || | ||||| || |||| || | ||||| || ||||| || | Sbjct 373039 GGGTACCTACGGCAGGGTTGCTCCCAGATCCGGATTAGCTGTCAAGCACGGAATTTCAAC 372980 Query 163600 TGGTGCGGGTGTTATTGATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTCTTCAATCA 163659 ||||| |||||||| ||| | ||||||| || || |||||||| |||||||||||||| Sbjct 372979 CGGTGCCGGTGTTATCGATGCTGACTACAGAGGGGAGGTCAAAGTTGTTCTCTTCAATCA 372920 Query 163660 TGGAGACAAAGACTT 163674 ||||| ||||| Sbjct 372919 CTCCGACAAGGACTT 372905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742330166480