Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 187 3e-42 seq1 87.8 2e-12 >seq3 Length=1410883 Score = 187 bits (206), Expect = 3e-42 Identities = 1105/1738 (64%), Gaps = 71/1738 (4%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACA 109559 ||| | |||||| || || |||||||| | | || || ||||||||||||||| Sbjct 803216 GTTGAGCGACTGTGATTGGTCGATGAAAGCAGATCTGTCGGCTGCCATGTCGATGATATG 803157 Query 109560 CTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGT---- 109615 ||||||| || ||||| || || |||||||| | |||| ||||| ||||||| Sbjct 803156 CTTTTGGGATATCTCCCACACGGTTTTGTACAATTGTTTGAGCTCATCTGGAATGTTGGG 803097 Query 109616 CCACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGATCCTTCATC-TCTT-TCGA 109673 | ||||| || || || || | || | |||| || || || | || ||| Sbjct 803096 CAACGAT----TGGATCGAACCGTTAT--TTGAA-ATGATATTATTTTTCATATTGTCGT 803044 Query 109674 -CCAGAGACCGACCTTTTTGAGATCGT-CAACAAG-ATGCTTGTTGACCACGACAAATTC 109730 ||| ||||| | || | ||| | ||||||| ||| |||||| | || || Sbjct 803043 TCCAAAGACCCAAATTGACCAAATCCTTCAACAAGTATGG--GTTGACTATTTGGAACTC 802986 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 |||||| | | | || ||||||||| | ||||| || || || || || ||||| Sbjct 802985 ACCAGCCAATACTCTTCTCGAGTAGATGTTCGAAGTGTATGGCTCAAAGCATTCGTTGTT 802926 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 ||||| ||||| | ||||| || || ||||| ||||| | || | ||||| | Sbjct 802925 GCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGAGCAACAAGCAATGAGTTTCTCAA 802866 Query 109851 ACCCTTCGTCTTTACCCGCTCACGCAT---TGCGTCCCAATCATAACGACCACTAAATT- 109906 ||| | | ||| || | || | || |||||| || |||| |||| Sbjct 802865 ACCATGC---TTTGCCATGTTTTGCTTCAATGTGTCCCAGTC-------CCAC--AATTC 802818 Query 109907 --TAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTT 109964 ||| || | ||||||| || || | | ||||| | || || || || | Sbjct 802817 GGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTCGATGCTGGGGAGCCTTC 802758 Query 109965 GAAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATG 110024 | | ||||||| | ||| || || || |||||||| || ||||| | || |||| Sbjct 802757 GTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCTCCACAGCACCATG 802698 Query 110025 ATACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAG 110084 || || |||||||| || ||| |||| | | |||| | | ||||| || | Sbjct 802697 GTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAGAATCGAATGGCA- 802639 Query 110085 ACCACAAAGA-ATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCT 110143 ||| ||||| || || |||| |||||||| || ||||||| | |||| || | || Sbjct 802638 ACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTC 802579 Query 110144 TCATGTTAGAGCGTCGAGCAGTTTCT---ACGGGGTAAAAGTTGCGGTCGATGACCCGAT 110200 |||||||||| | || |||| ||||| ||| | || ||||| |||| | | Sbjct 802578 TCATGTTAGATCTCTTTGC---TTCTGGAACGGGATAATAATTACGGTCAATGATTCTGT 802522 Query 110201 TGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAAC---GTTT 110257 | | || || || | || | || || || ||||| || ||| || ||| Sbjct 802521 TCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCAAAATTATACCAGGTTG 802462 Query 110258 TCGTCTCCTTATT---GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAG 110314 || | | | | |||| || || | | ||||| || | || || |||| | Sbjct 802461 AAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCCAAGTTACATACAGCAA 802402 Query 110315 TCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACAC 110374 ||| ||| | | |||||| | ||| || |||||| ||||| ||||| | || Sbjct 802401 CCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATAC 802342 Query 110375 CCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434 |||| ||||| || || | || ||| |||||||| ||||| |||||| |||| |||| Sbjct 802341 CCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTAC 802282 Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT-TGC 110492 | || || || || | || | || || | ||||| | || | | | | || || || Sbjct 802281 CTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATAACTTCTGAGCCTTG-ACGGTCTGT 802223 Query 110493 GTTAGCGAGACCTTCCTCCT-CGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 || | | || ||| | |||| || |||||| || || || || | ||| | Sbjct 802222 CTT--CCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAATT 802165 Query 110552 CATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 |||| | || || | | ||| | || | | ||| | | | | ||| | Sbjct 802164 TGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTA 802105 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | || |||||||||| ||||| ||||||| || | || | ||| | | | | Sbjct 802104 CTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTT 802045 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 |||| | ||| || || | | || | || || | ||||| | |||||||||| Sbjct 802044 CTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTT 801985 Query 110732 CGAGATAGACAGCGATGGATCC----CTTACGACGACCCGCCTGGTTAACATAGCGTGCT 110787 ||| || | ||| | || || ||| | | | | || | || || || ||| Sbjct 801984 CGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCAC-CTTGATCCACGTAACGAGCT 801926 Query 110788 GTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTA 110847 ||| || ||||| | | ||| |||||||| || | ||| ||| || || || | Sbjct 801925 GTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCA 801866 Query 110848 ATTCTGG-ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTT 110906 || || || ||| |||||| | ||||| |||| |||||||||||| || | ||| Sbjct 801865 ATGTAGGCACCCGTTGA-ACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTT 801807 Query 110907 ACTAATTTGTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGT 110965 ||| |||||| ||| | | || |||| ||||| || || || ||| |||| Sbjct 801806 GGAAATCAAAGCACACGTCT-TCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCA 801748 Query 110966 TGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAG 111025 |||||| | ||||| |||||||| || || | || || || |||||||| | || | Sbjct 801747 TGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTG 801688 Query 111026 GTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTC--GAGTGCGGAGGG 111083 | | ||||| |||| | ||| ||||| | ||||| || || | || || Sbjct 801687 GGGAAGCATGTGTGAAGTATCTTTGAGACATGTAATTGTAAGTCTCAATAACCCGTGGGA 801628 Query 111084 TA-CATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGA 111142 || ||||| || ||||||||||| ||||||| ||| | || | |||||| | ||| Sbjct 801627 TATCATCTCTA---TGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTCGG 801571 Query 111143 TTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | ||| || ||||| | | |||| |||||| ||||||| ||| ||||| Sbjct 801570 CAACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTA 801513 >seq1 Length=1903380 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 11758 GCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACACTGA-ATGAAGGGAAC 11816 ||||| ||||| |||||||| ||||| || | || | | ||| ||||| | ||| ||||| Sbjct 847005 GCTCCTACACCAACGAACATTTCAACAAATTCTGAGCCTGAA-ACTGATAAGAATGGAAC 846947 Query 11817 ATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGC 11876 | || ||||||||| |||| || || ||||||||||| |||||||| | ||| | Sbjct 846946 ACCAGCTTCACCAGCGGTGGCCTTCGCTAGAAGAGTCTTACCAGTACCAGGAGGACCTGA 846887 Query 11877 GAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 | | || || | ||| || |||||||| Sbjct 846886 TAAGATAGCTCCTCTGGGTATTTTGGCACC 846857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975933740200