Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 255 7e-63 seq5 93.3 5e-14 seq2 84.2 3e-11 >seq3 Length=1410883 Score = 255 bits (282), Expect = 7e-63 Identities = 880/1348 (65%), Gaps = 41/1348 (3%) Strand=Plus/Minus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 ||||||| |||||||||| ||||| || ||||||||||| || || || || ||||| Sbjct 802973 TCTTCTCGAGTAGATGTTCGAAGTGTATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTG 802914 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACC---CTTT 106039 | |||||| || || ||||| || || | | || || ||| | | ||| |||| Sbjct 802913 CGAGGTGGACGCAGTAGGCATAGGAGCAACAAGCAATGA--GTTTCTCAAACCATGCTTT 802856 Query 106040 TCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGT-TGAGCTTGGTTTCACCTTCCCA 106098 || || | || ||| | |||||||| | | | | || || | ||||| Sbjct 802855 GCCATGTT---TTGCTTCAATGTGTCCCAGTCCCACAATTCGGTAGGCTTT-CTGTCCCA 802800 Query 106099 CATATCAAATTG-AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAAC 106157 || ||| | || ||| ||||| | |||| || || || | ||||| || | | Sbjct 802799 CAAGTCATACTGCAAGAGACCCTTCGATGCTGGG-GAGCCTTCGTAGGTCTCGTATGTCC 802741 Query 106158 CTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGA 106217 ||| | |||| ||||| ||| | ||||||| | | || || || || ||||||| Sbjct 802740 CTTCGACTTCTGCCAACTCAATGGATGCCTCCACAGCACCATGGTAGATTGTCTCAAAGA 802681 Query 106218 TACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAA---ATAA 106274 | || |||| ||| ||||||| | ||||| |||| | | | | |||| || | Sbjct 802680 TTTGAATGTTCAATTCCCTGGCTTCTTGAGAATCGAATG-GCAAC--CTCAAAGCCATGA 802624 Query 106275 ATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CT-T 106332 | |||| || |||||||| ||||| | | |||| |||||||||| ||| ||||| || | Sbjct 802623 AGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGATCTCT 802564 Query 106333 TCGCGCAGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAA 106391 | || ||| |||||||||| |||| | |||||||| || ||| | || || | Sbjct 802563 TTGCT---TCTGGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTGA 802507 Query 106392 CAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAA---GTGCGAGTCTCTTCATT-- 106446 | || | || || |||||||||||| ||| | | || ||| | ||| | Sbjct 802506 CGGCTTTACTTATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCATCACTCT 802447 Query 106447 -GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 |||| | || | || || |||||||| || || ||||| |||||| | | | Sbjct 802446 CGACAAATGCAGGCAAGGATATAGATGCCAAGTTACATACAGCAACCTCATCTGGAGCAG 802387 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 ||| || | ||| || |||||| ||||| ||||| | |||||||||||||||| Sbjct 802386 AGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATTCTTTTGGT 802327 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 || |||| ||||| || ||||| || || |||||| | || || || ||||| || || | Sbjct 802326 TAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTCTGTTTGAG 802267 Query 106626 ACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCC 106684 || | || || | ||| | | || | | || | || | | | || || Sbjct 802266 CCTCTAAGATAGCATACCATAACTTCTGAGCCTTG-ACGGTCTGTCTTCCACGGTTTTCT 802208 Query 106685 GCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGT 106744 ||||| ||| ||| | |||| ||||| || || | ||| | | ||||| Sbjct 802207 CTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGCCGAATTTGTCAGCCAAGCCTGGA 802148 Query 106745 GCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGG 106804 || | | || | || | || ||||| | | ||| || | |||||||| | Sbjct 802147 GCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTTGCTCTACTCTTTTCATGAACAAA 802088 Query 106805 TCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTG 106864 || || ||||||| | || ||| | ||||| | ||||| | ||| || || Sbjct 802087 TCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCTTCCTTACCGTGATTC 802028 Query 106865 AGTCGTAAC-TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGAT 106923 || ||| |||| ||| || | ||||| || |||||||| || | || | || | Sbjct 802027 T-TCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTACAAAGCAAA 801969 Query 106924 AGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 106979 | || |||| | || | |||||| || || || |||||| |||||| |||| Sbjct 801968 GGCACCAGGTCTTTTGTTTCC-ACCTTGATCCACGTAACGAGCTGTGTTGTTAAAGACGC 801910 Query 106980 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 107039 ||| ||| ||||||||||| | || ||| || || || ||| | | | Sbjct 801909 GAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCACCCGTTG 801850 Query 107040 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 107099 | | || ||||||||||| |||||||| ||||| | ||| || || |||||| Sbjct 801849 AACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAAGCACACG 801790 Query 107100 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 107159 | | | || |||||||||||| ||| ||||| ||||| |||| | | |||||| Sbjct 801789 TCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCAACCAAGAAGCACG 801730 Query 107160 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 107219 ||||| || ||| |||||||||||||||||| | |||||| | || || |||| Sbjct 801729 AAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAAGCATGTGTGAAGT 801670 Query 107220 TACCTTGGGACATCTTGTCGTATGTCTC 107247 | ||| ||||| | | ||| ||||| Sbjct 801669 ATCTTTGAGACATGTAATTGTAAGTCTC 801642 Score = 96.9 bits (106), Expect = 4e-15 Identities = 337/513 (66%), Gaps = 25/513 (5%) Strand=Plus/Minus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||| ||||||| | |||| | ||| || ||||| || |||||||| | ||| | ||| Sbjct 929136 ACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCATCATACCTCTCTT 929077 Query 117351 CTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 117409 ||||||||| | |||| ||| ||||| || |||||| |||||||| ||| || | Sbjct 929076 CTTCAACCAGAAGATAGATGCA-AATGAACCACTGAAGAAAATACCCTCAACAGCAGCGA 929018 Query 117410 ACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCCAT 117468 | |||| ||| || || |||| | | ||| | || | |||| ||| ||||| Sbjct 929017 AAGCAACAAGACGTTCACCGAA-TAATGCATCTTCATCGTTGATCCATCTCAAAGCCCAG 928959 Query 117469 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA-----CTGCTTCT 117523 | |||||||||| |||||||| | | | || || | ||| || | || ||| Sbjct 928958 TCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAAAAGTCAGCCTCT 928899 Query 117524 TTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCA 117583 || | |||||| || || | ||||||||| || || ||||| || | Sbjct 928898 TT-----TGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGAGTGGATAT 928844 Query 117584 T-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCC 117642 | | ||| || | |||| || | || || | ||||| | || |||||| | Sbjct 928843 TCTCCATCAT-GATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAACTTCAGCT 928785 Query 117643 GCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 117702 | ||||| | | | ||||| ||||| ||||| || |||||||||| || | | Sbjct 928784 GAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAAAGCTAAG 928725 Query 117703 ATGTACTT--TATGAATTTCTTTTCATTTTCATT---CAGGGTCTTCCAGTCGT-CAAGA 117756 | | ||| ||||| | ||||||| ||||| | | ||||||||| | |||| Sbjct 928724 A--TTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGTCATGCAAG- 928668 Query 117757 TCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 117789 || || ||| |||| ||| || ||||||||| Sbjct 928667 TCCTTACCCAAGTCAATTTCCTCAGCAGTCCAA 928635 >seq5 Length=1138348 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 155053 GTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGGGTGTTATT 155112 ||||| || ||||||| | ||||| ||||| || ||| | ||||| |||||||| Sbjct 373023 GTTGCTCCCAGATCCGGATTAGCTGTCAAGCACGGAATTTCAACCGGTGCCGGTGTTATC 372964 Query 155113 GATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACAAAGACTT 155171 ||| | ||||| | ||| || |||||||| ||||||||||||||| ||||| ||||| Sbjct 372963 GATGCTGACTACAGAGGGGAGGTCAAAGTTGTTCTCTTCAATCACTCCGACAAGGACTT 372905 >seq2 Length=1812747 Score = 84.2 bits (92), Expect = 3e-11 Identities = 217/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 |||||||||| |||||||| ||||||||| || | ||| ||| | || ||||| | Sbjct 194379 TATCAAAACCGTCCATCTCAACCAAAAGTTGATTCAAAGTGGTTTCTCTCTCGTCATTAG 194320 Query 9337 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 9387 | ||||| |||| | | || | || || | ||||| || ||||| | Sbjct 194319 C------ACCACTAGCATTTCCTTTGGAACGCTGTTTACCAATAGCATCGATTTCATCCA 194266 Query 9388 TGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGG 9447 || ||||| | || |||||| || || ||| ||| | ||| ||||| | | Sbjct 194265 CAAAAACAATGGAAGGGGCATTTTCTCGAGCAGTTTTAAACAAATCTCGAACACGAGAAG 194206 Query 9448 CGCCCACACCAACAAACATCTCCACAAAGTTTG-CGGCGGAACATTGGATGAAGGGGACA 9506 |||||||||||||||||||||| ||||| | | | | |||| | | || || ||| Sbjct 194205 CGCCCACACCAACAAACATCTCAACAAACTCGGACCCAGAAACAGAGTA-AAATGGAACA 194147 Query 9507 TTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCG 9566 | ||||| ||| | || || | | ||||||||| || |||||| || | Sbjct 194146 CCTGCCTCACCAGCAGTAGCCTTTGCTATCAAAGTCTTACCTGTTCCTGGCGGGCCAGAT 194087 Query 9567 AGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 | | ||||| | ||||||||| || ||| Sbjct 194086 AATATTGCACCTCTTGGAATCTTCGCACCA 194057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980733627160