Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=1903380 Score = 123 bits (136), Expect = 3e-23 Identities = 280/411 (68%), Gaps = 20/411 (5%) Strand=Plus/Plus Query 159379 GATAAAAGAAATGTATGTTTGATACCAGAGTCAG--CACATGGAACTAATCCTGCATCAG 159436 || ||||||||| | ||| | || |||| |||| |||||||||| || ||||| || | Sbjct 963625 GAGAAAAGAAATATTTGTCTTATCCCAG--TCAGTGCACATGGAACCAACCCTGCTTCTG 963682 Query 159437 CAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGAT--GATGGCAACATAGA 159494 ||| ||| ||| |||| || |||| |||||||||| | || ||||| || || Sbjct 963683 CAGCAATGAGTGGGTTGAAGGTCGTAGCTGTCAAGTGT--TTATCCGATGGTTCAATTGA 963740 Query 159495 CATCAAAGATCTAGAGAAGAAAGCAATCATGAATA-CATTT-GAA---CTGTCATGTATT 159549 | ||||| || || ||||| |||| | |||| ||| || | | ||| Sbjct 963741 TTTGGAAGATTTAAAGGCTAAAGC-----TGAAAAGCATTCCGAAAATCTTTGTTCTATC 963795 Query 159550 ATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATGTAA 159608 ||||| ||||| ||||| || ||||| | ||||| || |||| ||| | || | | Sbjct 963796 ATGATCACATACCCATCCACGTATGGTTTGTTTGAGCCAGGTATCAAGACGGCAAT-TGA 963854 Query 159609 GATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGT 159668 | || || || |||||||| ||| ||| | |||||||| || | |||||| || Sbjct 963855 TACCGTCCACGAATATGGTGGTTTGGTTTATTTGGATGGTGCCAACATGAATGCAGCTGT 963914 Query 159669 AGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGAC 159728 ||| | | || |||| | |||||||||||||||||| | ||| | || || | Sbjct 963915 TGGTTTGACCTCTCCTGGTGATTTAGGTGCAGATGTATGTCATTTGAACATCCACAAATC 963974 Query 159729 ATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||| | | |||||||| ||||||||||| || |||| || |||| Sbjct 963975 ATTTGCTTTAAGTCATGGAGGAGGAGGTCCTGGACAAGCTCCTGTTTGTGT 964025 Score = 120 bits (132), Expect = 4e-22 Identities = 183/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 158434 GGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTT 158493 |||| | |||||| || || |||| | ||||| || || |||||||||||||||||| Sbjct 962662 GGTACTTCGCAAAGATTCGGAGTTCCCTTTGGATATGGTGGACCTCATGCTGCATTCTTT 962721 Query 158494 GCAAC-AACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGA 158552 ||||| ||| | |||||| |||||||| || || ||||| || ||| || ||| Sbjct 962722 GCAACTAACTCA-AAGTATGCAAGAAAGATTCCGGGTAGAATCGTTGGTGTTTCCAAAGA 962780 Query 158553 TAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAG 158612 ||| |||| | |||| | ||||| || |||| ||||| || ||||| || | | | Sbjct 962781 TAGATTAGGTGAGCAAGCTTTAAGATTGGCTTTACAAACTAGGGAACAGCACATTAAACG 962840 Query 158613 AGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTT 158672 || || ||||| |||||||| || || |||||| | || || || || || | | Sbjct 962841 TGAGAAGGCAACTTCCAACATCTGTACTGCTCAAGCATTACTTGCAAACATATCGGCCAT 962900 Query 158673 CTATGCAGCATATCATGG 158690 ||||| | ||| || || Sbjct 962901 GTATGCTGTATACCACGG 962918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051133844240