Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 345 5e-90 seq7 159 4e-34 >seq3 Length=1410883 Score = 345 bits (382), Expect = 5e-90 Identities = 617/894 (69%), Gaps = 9/894 (1%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||||||||| |||||||| || ||||| |||||||| || || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 || || || |||||| |||||||| |||||| | ||||| || | |||| | || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 || | | || || |||||| || ||||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 ||| || | || ||||||| |||||| || | |||||| | ||| || | || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 18897 CTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACAT 18956 || | ||||| |||| | ||| ||| || || | | | ||| |||| Sbjct 929220 TTCGGTGATAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAA 929161 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || || ||||| ||| ||||| || || ||||| | |||||||| ||||| ||||| Sbjct 929160 TAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGT 929101 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | ||| ||||||| ||||| || || |||||||| ||||| |||||||| ||| || Sbjct 929100 AAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAA 929041 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTA 19134 ||| ||||| || || || || |||||||| || | ||| || |||| ||||| | | Sbjct 929040 GAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAAT--GCATCTTCA 928983 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194 | | |||||| ||| ||||| ||||||||||| || | |||||| || | || || Sbjct 928982 TCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATT 928923 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | |||||| | | | | ||| | || ||| || | ||| | ||| ||||||||| | Sbjct 928922 GCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAG 928863 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 || ||||||| || ||||| || || || |||||||| ||||| ||| | |||||| Sbjct 928862 TAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCT 928803 Query 19315 GTTATCTGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 | | || |||||| || |||| | || ||||| || || || || || |||||| Sbjct 928802 GGAACTTGAACTTCAGCTGAGAAAT-TCTCAACCAAGTTCTCGTTGACAATACCATCAGA 928744 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA--TGT- 19430 || ||||| || ||||| | | ||| ||| |||||| |||| ||| Sbjct 928743 TGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTC 928684 Query 19431 ATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTC 19490 ||||| |||| | || ||| || || | ||| ||| | |||||||| |||||||| Sbjct 928683 CTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTC 928624 Query 19491 TGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||||||| ||||| | ||| || || ||||| || ||||| | |||||| Sbjct 928623 AGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Score = 196 bits (216), Expect = 5e-45 Identities = 600/926 (65%), Gaps = 10/926 (1%) Strand=Plus/Minus Query 47882 TATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGC 47941 ||||||||| | ||||||||||| ||||||| |||| || |||| | || || Sbjct 802427 TATAGATGCCAAGTTACATACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCA 802368 Query 47942 ACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGC 48001 ||| | ||| |||| ||| |||||||||| | || ||| | ||||||||||| Sbjct 802367 ACACAAATTGGATGATTTAATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGC 802308 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || |||||||| || || || || || ||| | |||| || | ||||| | ||| Sbjct 802307 ATCTTTATAAAGCATGAATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCA 802248 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA----TTATCATGTTCGTATTTAGTAT 48117 | || |||||| | | ||| ||| || || ||||||||| | Sbjct 802247 TAACTTCTGAGCCTTGAC----GGTCTGTCTTCCACGGTTTTCTCTTTCGTATTTTTCGT 802192 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | |||| || || ||||| || | | | | || || ||| |||||| || | | Sbjct 802191 ACAACTCTTCGAACTCATCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAA 802132 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 ||| | ||| || | || | | |||||| |||| || | ||| || ||||| | || Sbjct 802131 ACAAAGTCCATTCTTTATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAG 802072 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 || |||||| || || | ||| |||||| || || |||| | ||| |||| | Sbjct 802071 CTGGAAATAAGTCTCTGGCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGA 802012 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | ||||| |||||||||||||| | || | || | |||| |||| ||| | Sbjct 802011 AATCAAAAATATCTGCATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGT 801952 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | || |||||||| | || | || || |||||| | || | | ||| || | ||||| Sbjct 801951 TTCCACCTTGATCCACGTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATAC 801892 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-T 48476 | || || |||| |||||||| | ||| || || | | | |||||| || | Sbjct 801891 CGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGT 801832 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 | || ||| |||||||| || | || || || | ||||||| || | || ||||| Sbjct 801831 GCAA-ACCAATACCACCAGCACTCTTGGAAATCAAAGCACACGTCTTCAACGTGTCATAG 801773 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || || || || || || |||| | | || || ||||||||| || || Sbjct 801772 ATACCGTCGATGGAGTCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGT 801713 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 || || | ||| || || ||||| || ||||| | || || | | || | | Sbjct 801712 GGTGTACCAGCATTGAACAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTAA 801653 Query 48657 TTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATT 48716 || || || |||||||| ||||| | ||| ||||| |||| || | ||| Sbjct 801652 TTGTAAGTCTCAATAACCCGTGGGATATCATCTCTATGAATACCAATAGCAACTCTCATA 801593 Query 48717 AACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCC 48776 | || | ||||||||| || ||| || | | ||||| | || ||| | || Sbjct 801592 ATCAAGTGTTGAGGTCTCTCGGCAACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCT 801533 Query 48777 AATGTTTTAAAACCAAAATAGTTGTA 48802 || || || ||||| || |||||||| Sbjct 801532 AACGTCTTGAAACCGAAGTAGTTGTA 801507 >seq7 Length=1027266 Score = 159 bits (176), Expect = 4e-34 Identities = 267/380 (70%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 48171 GGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATC 48230 ||| | | ||| ||||||| || || | |||||| || |||| || | ||| |||||| Sbjct 251919 GGAGAGAACAAGGACCAATTCTTATTTTCTTTTACCCTTTTCATGAAAAGATCGGGTATC 251860 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || | | | ||| ||||| | || ||| | ||||| || ||| || ||||| | | Sbjct 251859 CATAAACCATAAAACAAATCGCGAGCTCTCATCTCTTCCTTTCCATGGTTTCTTTTCAAT 251800 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 || | ||| || | |||||| ||||||||| |||||||| || || | | |||||| Sbjct 251799 TCTAAAAATTCAAAAATATCACTATGCCATGGCTCTAAATAAATAGCAAAAGCGCCTGGT 251740 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 | ||||| || ||||| || | ||||| ||||||||||| |||| || | ||| || Sbjct 251739 CTCTTATTCCCACCTTGGTCAACGTATCTCGCAGTATTGTTGAAAACCCTGAGCATAGGC 251680 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 ||||||||| |||| |||||||| | ||| || | |||| || ||||||| || Sbjct 251679 ACAATACCACTTGACATACCATTTGAAGACGAGATGAAGGATCCATTACCTCTTATGTTG 251620 Query 48471 CTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACC--GTTTAAGG 48527 ||| || || |||| ||||| | ||| || || |||||| ||| || ||| Sbjct 251619 TGAATATGTAA-GCCTACTCCACCAGAAGCTTTGGAAATGAGAGCA-ACCTTGTGTAA-A 251563 Query 48528 GTATCATAAATTCCTTCTAT 48547 || | |||||||| || || Sbjct 251562 GTTTTGTAAATTCCATCAAT 251543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108736762760