Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3 212 7e-50 >seq3 Length=1410883 Score = 212 bits (234), Expect = 7e-50 Identities = 503/748 (67%), Gaps = 23/748 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| |||||||| || | |||| |||| ||||| || || || || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | || || |||||||| |||||||| ||||| |||| | || |||| || | Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATT---TGTA----ACATTGTAC-ACCTTT 929349 Query 36992 TAATT-CCTTCAGAAGC-------CTATCCGCAACAAATTCTATGTATTTACACATTA-G 37042 | || || || | | ||||| ||||||||||| | |||| |||||| | | Sbjct 929348 TCGTTACCCAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAG 929289 Query 37043 TTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTA 37101 | || || ||||| | | || || | |||||| |||| |||| ||||| | Sbjct 929288 CTGCTA-TTCATACCCAACAAAGAGACAGGTAATGCATCGGTGAA-AAATTCCTTTTCAA 929231 Query 37102 TTATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAAT 37161 | | || || || | | || | ||| || |||| || ||| | || |||| Sbjct 929230 TGGTAACGGCTTCGGTGATAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAAT 929171 Query 37162 ATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCAT 37221 |||||||| || ||||| ||| |||||||||||||||||| | |||||||| | Sbjct 929170 GAGAGAACAATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGT 929111 Query 37222 TAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG 37281 |||| || || | |||||||| | |||||| || || | ||| || || | |||||| | Sbjct 929110 TAGAGAATGTAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATG 929051 Query 37282 ATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTG 37341 | ||| ||||||||||| ||||| || || || || ||||||||| |||||| || Sbjct 929050 AACCACTGAAGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATG 928991 Query 37342 AACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTG 37401 | | ||| |||||| | | ||| || ||||| || | |||| ||| Sbjct 928990 CATCTTCATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGT 928931 Query 37402 TTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | |||||||| || || | ||||| |||| ||| | ||||| |||||||| | Sbjct 928930 TGTCAATTGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCA 928871 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 |||| || |||| ||||| ||||| || || || ||||| |||||||| || Sbjct 928870 ATAAAGAGTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATT 928811 Query 37522 TAGCTTCAGATAATTGAACATC-GTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATC 37580 | ||||| | | |||||| || | | | ||| ||| | | ||||| || || || || Sbjct 928810 TGGCTTCTGGAACTTGAACTTCAGCTGAGAAA-TTCTCAACCAAGTTCTCGTTGACAATA 928752 Query 37581 CCATCACTAGCTGCAAAGAAAGC-AAGA 37607 |||||| || ||||||||||| |||| Sbjct 928751 CCATCAGATGCAGCAAAGAAAGCTAAGA 928724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316733364360