Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq3 150 9e-32 seq7 136 2e-27 >seq3 Length=1410883 Score = 150 bits (166), Expect = 9e-32 Identities = 309/454 (68%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 ||||||||| ||| | | ||| || ||||| || ||||||| || |||||| ||||| Sbjct 802115 ATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCT 802056 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 ||||| ||||||| || ||||||||||| | | || | ||||||||||||||||| Sbjct 802055 GGCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGC 801996 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 ||||||||||| | || | |||||| ||| |||||| |||||||||||| || Sbjct 801995 ATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCAC 801936 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGT 26153 ||| | || || | || || || | ||| |||| |||| | |||| | | |||| Sbjct 801935 GTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAA-TAATACCGTTGGAGGTACCGT 801877 Query 26154 TTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 | || | ||| | || || || || | ||||| || || | ||| || |||| Sbjct 801876 TGGTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCAC 801817 Query 26214 CAGCCCATTTTGAAATAGCTGCACA-ATCTGAAACTGTATCGAAAATTCCTTTTATGCTA 26272 |||| | || ||||| ||||| ||| ||| || || | || || | ||| Sbjct 801816 CAGCACTCTTGGAAATCAAAGCACACGTCTTCAAC-GTGTCATAGATACCGTCGATGGAG 801758 Query 26273 TCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTA 26332 || | ||||| | | || || || ||||| | ||| | || | ||| || | ||| Sbjct 801757 TCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTG 801698 Query 26333 AATAATGTCGGTGTAGCATGAGTATAATATCCTT 26366 || || || || | |||||| || | |||| || Sbjct 801697 AACAAGGTTGGGGAAGCATGTGTGAAGTATCTTT 801664 >seq7 Length=1027266 Score = 136 bits (150), Expect = 2e-27 Identities = 167/226 (74%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| || | ||| || ||||| | ||||||| ||||| | |||||||| ||||| || Sbjct 251878 CATGAAAAGATCGGGTATCCATAAACCATAAAACAAATCGCGAGCTCTCATCTCTTCCTT 251819 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 ||| || || |||| | ||||| || ||||||||||| |||||||| |||||||| Sbjct 251818 TCCATGGTTTCTTTTCAATTCTAAAAATTCAAAAATATCACTATGCCATGGCTCTAAATA 251759 Query 26053 GATAGCAAAACTACCT--TTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 ||||||||| ||| | |||| ||| |||||||| || |||||||| ||||| | Sbjct 251758 AATAGCAAAAGCGCCTGGTCTCTTATTC--CCACCTTGGTCAACGTATCTCGCAGTATTG 251701 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTG 26156 |||||||| | | ||| || || | ||| |||| | || |||| Sbjct 251700 TTGAAAACCCTGAGCATAGGCACAATACCACTTGACATACCATTTG 251655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039972244675