Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 293 3e-74 seq5 93.3 5e-14 >seq3 Length=1410883 Score = 293 bits (324), Expect = 3e-74 Identities = 910/1381 (66%), Gaps = 47/1381 (3%) Strand=Plus/Plus Query 75275 GAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAAT 75334 ||||| ||| | | ||||| ||| | |||| || || | |||||| | |||||| Sbjct 801642 GAGACTTACAATTACATGTCTCAAAGATACTTCACACATGCTTCCCCAACCTTGTTCAAT 801701 Query 75335 GCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCA 75394 |||||||||||| ||| || ||||| |||||| | | |||| ||||| ||||| Sbjct 801702 GCTGGTACACCACAACCACAAATGTCTTCGTGCTTCTTGGTTGCCATGAAGGAAGACTCC 801761 Query 75395 ATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGT 75454 ||| |||||||||||| || | | | |||||| || || ||| | ||||| ||| Sbjct 801762 ATCGACGGTATCTATGACACGTTGAAGACGTGTGCTTTGATTTCCAAGAGTGCTGGTGGT 801821 Query 75455 ATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGT 75514 ||||| ||||||||||| || | | | | | ||| || || || ||| Sbjct 801822 ATTGGTTTGCACATCCATAATATTCGTTCAACGGGTGCCTACATTGCCGGAACCAACGGT 801881 Query 75515 CAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 75574 || | ||||||||||| ||| ||||||| |||||| |||||| || || || || Sbjct 801882 ACCTCCAACGGTATTATTCCCATGGTTCGCGTCTTTAACAACACAGCTCGTTACGTGGAT 801941 Query 75575 CAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGCATGCCGA 75630 |||| | || | ||| || || | || | ||| | |||||||||||||| || Sbjct 801942 CAAG-GTGGAAACAAAAGACCTGGTGCCTTTGCTTTGTACATCGAACCATGGCATGCAGA 802000 Query 75631 TATCATGGAGTTCCTTGA-GTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGAG 75689 ||| | || ||| |||| ||| || || || ||| | ||||| | |||| Sbjct 802001 TATTTTTGATTTCGTTGACATTAGGA-AGAATCACGGTAAGGAAGAAAACAGAGCCAGAG 802059 Query 75690 ATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTC 75749 | | ||| || | ||||||| || || | |||||||| | || ||| | | Sbjct 802060 ACTTATTTCCAGCTTTGTGGATCCCTGATTTGTTCATGAAAAGAGTAGAGCAAAATAAAG 802119 Query 75750 AATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGT 75809 ||||| || | || | || | | || ||||| | | ||| | || || |||| Sbjct 802120 AATGGACTTTGTTTTCCCCCAATGAAGCTCCAGGCTTGGCTGACAAATTCGGCGATGAGT 802179 Query 75810 TTGAAGCCCTCTACACAAAGTATGA---AGAGGAGGGTAG-AGCCAATGCGACTGTACCA 75865 | |||| | ||| ||| || || ||| | || | || || ||| || | | Sbjct 802180 TCGAAGAGTTGTACGAAAAATACGAAAGAGAAAACCGTGGAAGACA----GACCGT-CAA 802234 Query 75866 GCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 | | | || ||| ||| | ||||| | | | || || ||||| || || |||| || Sbjct 802235 GGCTCAGAAGTTATGGTATGCTATCTTAGAGGCTCAAACAGAGACAGGTACTCCATTCAT 802294 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 |||||| || ||||| ||||||||||||| |||||||||||||||||| | || || Sbjct 802295 GCTTTATAAAGATGCATGTAACAAGAAGACTAACCAAAAGAATTTGGGTATTATTAAATC 802354 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 || ||| | || || ||| | || ||| | | | |||||| ||||| || || Sbjct 802355 ATCCAATTTGTGTTGCGAGATTGTTGAATACTCTGCTCCAGATGAGGTTGCTGTATGTAA 802414 Query 76045 TTTGGCATCAATCGCCCTTCCAAAGTATGTC---AATGAAGAGACTCGCAC---TTTTGA 76098 |||||||| || || | || | |||| | ||| | ||| || | | | Sbjct 802415 CTTGGCATCTATATCCTTGCCTGCATTTGTCGAGAGTGATGCTACTTCAACCTGGTATAA 802474 Query 76099 TTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGA 76158 || |||||||||||| || || | || || || || | ||| || ||||||| Sbjct 802475 TTTTGAAAAACTTCACGATATAAGTAAAGCCGTCACTCGTAACTTGAACAGAATCATTGA 802534 Query 76159 CAGAAATTTTTATCCCGTT-GAGACTGCGCGAA-AG-TCTAATATGCGACACAGACCTAT 76215 | | |||| |||||||||| ||| || || || ||||| ||| |||||||||| || Sbjct 802535 CCGTAATTATTATCCCGTTCCAGA---AGCAAAGAGATCTAACATGAGACACAGACCAAT 802591 Query 76216 TGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTAT---TTTGTGCCGCTACGCATTTGA 76272 || | | ||||| |||||||| || |||| || || |||| | | | | |||| || Sbjct 802592 TGCTGTCGGTGTCCAAGGTCTAGCCGATGCCTTCATGGCTTTGAG--GTTGC-CATTCGA 802648 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||| | ||||||| ||| |||| || |||||||| || || || || | | | Sbjct 802649 TTCTCAAGAAGCCAGGGAATTGAACATTCAAATCTTTGAGACAATCTACCATGGTGCTGT 802708 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 |||||| ||| ||||| |||| | |||| | || ||||| | || || || || Sbjct 802709 GGAGGCATCCATTGAGTTGGCAGAAGTCGAAGGGACATACGAGACCTACGAAGGCTCCCC 802768 Query 76393 CGCGTCCCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACCAAGCTCA-ACTAC 76450 || | | ||||| ||| |||| ||| ||||||| | || || | | | | Sbjct 802769 AGCAT-CGAAGGGTCTCTTGCAGTATGACTTGTGGGACAG-AAAGCCTACCGAATTGTGG 802826 Query 76451 GACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTTT--T 76506 |||||||| | ||| || ||| ||| || | ||| | | ||| || || | Sbjct 802827 GACTGGGACACATTGAAGCAAAACATGGCAA--AGCATGGTTTGAGAAAC--TCATTGCT 802882 Query 76507 GATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 76566 | || || ||||| || || |||||| | ||||| || || || || ||||||||||| Sbjct 802883 TGTTGCTCCTATGCCTACTGCGTCCACCTCGCAAATTTTAGGCAACAACGAATGCTTTGA 802942 Query 76567 ACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA 76626 |||||||| | ||||||||| ||||||| | || |||||||| || ||||| Sbjct 802943 GCCATACACTTCGAACATCTACTCGAGAAGAGTATTGGCTGGTGAGTTCCAAATAGTCAA 803002 Query 76627 C 76627 | Sbjct 803003 C 803003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 337/513 (66%), Gaps = 25/513 (5%) Strand=Plus/Plus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTG-ACGACTGGAAGACCCTG---A 64768 ||||||||| || ||| |||| ||| || || |||| | ||||||||| | | | Sbjct 928635 TTGGACTGCTGAGGAAATTGACTTGGGTAAGGA-CTTGCATGACTGGAAGGACAAGTTAA 928693 Query 64769 ATGAAAATGAAAAGAAATTCATA--AAGTACATCCTGGCATTCTTTGCTGGGTCCGATGG 64826 |||| ||||||| | ||||| ||| | || | || |||||||||| || ||||| Sbjct 928694 ATGACAATGAAAGGTTTTTCATTTCAAGAA--TCTTAGCTTTCTTTGCTGCATCTGATGG 928751 Query 64827 AATTGTTTTTGAGAATATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCG 64886 ||||| ||||| | | | ||||| | | |||||| || | ||||| Sbjct 928752 TATTGTCAACGAGAACTTGGTTGAGAATTTCTCAGCTGAAGTTCAAGTTCCAGAAGCCAA 928811 Query 64887 CTCATTCTACGCATATCAATGCCATAATGAA-ATGGTTCATGGCGAAACATATTCAAAAT 64945 | || || | || |||| | || ||| | | | || ||||| || || || Sbjct 928812 ATGCTTTTATGGATTTCAAATC-ATGATGGAGAATATCCACTCAGAAACCTACTCTTTAT 928870 Query 64946 TGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAG-----TTATTTGAAGCCAT 65000 ||||||| | || || |||||| | ||||| || | || ||| | || || Sbjct 928871 TGATTGATACCTATATCAAGGATCCA-----AAAGAGGCTGACTTTTTGTTTAATGCAAT 928925 Query 65001 CCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAA 65059 | | | |||||||| |||||||||| | ||||| ||| |||| | || | | Sbjct 928926 TGACAACATTCCATGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACGATGA 928985 Query 65060 AGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCT 65119 || | | |||| || || ||| |||| || || ||| |||||||| |||||| Sbjct 928986 AGATGCATTA-TTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCTTCA 929044 Query 65120 CCGGGTCATTCTGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGC 65178 || ||||| ||| |||| | |||||||||||| | ||| | |||||||| || Sbjct 929045 GTGGTTCATT-TGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTACA 929103 Query 65179 TTCTCAAATGAACTTATTTCCCGAGATGAGGGT 65211 ||||| || ||| | |||| | ||||||| ||| Sbjct 929104 TTCTCTAACGAATTGATTTGCAGAGATGAAGGT 929136 >seq5 Length=1138348 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 27904 AAGTCTTTGTCTCCGTGATTGAAGAGAACGACTTTGACTTCACCTGTATAGTCGGGATCA 27963 ||||| ||||| ||||||||||||||| |||||||| || ||| | ||||| | ||| Sbjct 372905 AAGTCCTTGTCGGAGTGATTGAAGAGAACAACTTTGACCTCCCCTCTGTAGTCAGCATCG 372964 Query 27964 ATAACACCCGCACCAACTTGAATACCATGCTTCACAGCGAGACCGGATCGTGGTGCAAC 28022 |||||||| ||||| | ||| || ||||| ||||| | ||||||| || ||||| Sbjct 372965 ATAACACCGGCACCGGTTGAAATTCCGTGCTTGACAGCTAATCCGGATCTGGGAGCAAC 373023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569532885920