Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq8 150 3e-31 seq3 150 3e-31 >seq8 Length=1028784 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | |||| ||| || || | || || ||| || Sbjct 326409 ATTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTG 326350 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || ||||| || || |||||||| |||||||| |||||||| ||||| Sbjct 326349 TAGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGG 326290 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| || || | || | || |||||||| ||| Sbjct 326289 TCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAA 326230 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| | ||| || ||||| || || | || || || || |||||||| Sbjct 326229 GACTCAACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 149 bits (164), Expect = 1e-30 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | |||| ||| || |||| || || ||| || Sbjct 326182 AATTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTT 326123 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| ||||| ||||| || ||||||||||| || || ||||| ||||| ||||| Sbjct 326122 GTAGTCTGATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTG 326063 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || ||||| |||||||| || || | || | || |||||| || || Sbjct 326062 GTCTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGA 326003 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||||| | ||| || ||||| || || | || || || || |||||||| Sbjct 326002 GGACTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 Score = 147 bits (162), Expect = 4e-30 Identities = 174/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | |||| ||| || || | || || ||| || Sbjct 325953 ATTTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTG 325894 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| ||||| ||||| || ||||||||||| ||||| ||||||||||| ||||| Sbjct 325893 TAGTCAGATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGG 325834 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| |||||||| ||||| | || | || || || |||||| Sbjct 325833 TCTGGTGGGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAA 325774 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| || || || ||||| || | || || || || |||||||| Sbjct 325773 GACTCGACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 131 bits (144), Expect = 3e-25 Identities = 176/244 (72%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 193117 AGTAAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAG 193176 |||||| || || |||||||||| || | | |||| ||| || || | || || Sbjct 326643 AGTAAG--ATCTAGTTACCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTT 326586 Query 193177 AAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATC 193236 |||||| ||||| || || |||||| || || |||||||| || || ||||| || | Sbjct 326585 GAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACC 326526 Query 193237 TCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAG 193296 | || || || || || || ||||| |||||||| || || | || | ||| ||||| Sbjct 326525 TTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAG 326466 Query 193297 TATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTT 193356 | || || ||||||||||| | ||| |||||||| || || | || || || || |||| Sbjct 326465 TGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTT 326406 Query 193357 GCAT 193360 |||| Sbjct 326405 GCAT 326402 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||||||||||| | || | ||| || |||| || || || || Sbjct 325725 ATTTGCATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTG 325666 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || ||||| || || |||||||| || || ||||| ||||| || || Sbjct 325665 TAGTCGGACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGG 325606 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| |||||||| || || | || | || || || || || Sbjct 325605 TCTGGAGGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAG 325546 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || | || ||||| |||||||||| || || || || ||||||||| Sbjct 325545 GATTCGACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489 >seq3 Length=1410883 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||||||||| | |||| |||||| |||| ||| || || |||||||| || Sbjct 317555 ACCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGA 317614 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || ||||| ||| || || ||||| || || || |||||||| || |||||||| || Sbjct 317615 CAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGG 317674 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| ||||| | || | ||| |||||| || || || || || Sbjct 317675 AATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGAC 317734 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| || ||||| |||||||||| || || || || |||||||| || Sbjct 317735 CTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899654298788880