Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq3 192 9e-44
seq8 145 1e-29
>seq3
Length=1410883
Score = 192 bits (212), Expect = 9e-44
Identities = 558/849 (66%), Gaps = 17/849 (2%)
Strand=Plus/Minus
Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923
||||| || || | |||| | || || || || || || || || |||| || ||
Sbjct 929447 TTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTT 929388
Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983
| ||| |||||||| ||||| || || || ||||| | || | ||||
Sbjct 929387 TCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACCCAAAGCAACTAAT 929328
Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043
||||||||||| ||||||||||||||||| ||||||| || ||||||||| | |
Sbjct 929327 AATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAAA 929268
Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103
|| ||||| ||||| | | |||||| || || || ||| | || | || ||
Sbjct 929267 GAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAATC 929208
Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATT-ATAATATAATAAACACGC 18162
| || |||| ||| | | || || | | | | | ||||| || ||
Sbjct 929207 CTCTCAACA----ATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGC 929152
Query 18163 AAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGG 18222
||| ||||| |||||||||||||||||| | || ||||||||| || || | || ||
Sbjct 929151 AAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGG 929092
Query 18223 CATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACC 18282
||| |||||||| || || | ||| || || ||||| || || | ||||| |||||
Sbjct 929091 CATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACC 929032
Query 18283 CTCAAC-GCACGCGAACGCTATTAATCTTTCAGC-AAAACTGTATTTATTGCTCAGT-AT 18339
|||||| ||| ||||| || | | | |||| | || | || | | || || | ||
Sbjct 929031 CTCAACAGCA-GCGAAAGCAACAAGACGTTCACCGAATAATGCA--TCTTCATCGTTGAT 928975
Query 18340 CCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAA 18399
|||| | ||||| || | | ||||| || || | || || ||||||||
Sbjct 928974 CCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAA 928915
Query 18400 CAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTC 18459
|||| || ||||| | ||| || ||||| || || || || ||||| || ||||
Sbjct 928914 CAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTC 928855
Query 18460 AGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTG 18519
|| || || | ||||| || ||||| | |||||| || | || || ||| |||
Sbjct 928854 TGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTG 928795
Query 18520 AATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578
|| || ||| |||| | || ||||| ||||| || || ||||| |||| | || |
Sbjct 928794 AACTTCAGCTGAGAAAT-TCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAA 928736
Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG---TTCCATT 18635
| || || || | | ||||||| ||||||| || || | ||| ||||| |
Sbjct 928735 AGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGT 928676
Query 18636 CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTT 18695
||| | || || | |||| ||| || | |||||||| || | || || | ||
Sbjct 928675 CATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTT 928616
Query 18696 TGTACATTT 18704
|||||||||
Sbjct 928615 TGTACATTT 928607
>seq8
Length=1028784
Score = 145 bits (160), Expect = 1e-29
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || |||||||||||||| || || || ||||| || |||
Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| ||||| || | ||| || |||||||| ||||| || || ||||| |||
Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||||||||||| || ||||| || | ||||| |||||| |||||||| || ||
Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAACATTATCAGACTACAAC 326125
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| || | || | ||||| || || ||||| ||||| |||
Sbjct 326126 AT-TCAAAAGGAATCTACTTTACATTTGGTTTTGAGATTGAGAGGTGGT 326173
Score = 136 bits (150), Expect = 6e-27
Identities = 169/229 (74%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || |||||||| || || ||||| ||||| ||||| |||
Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | || ||||| || | |||||| |||||||| ||||| || || ||||| |||
Sbjct 325778 GACACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 325837
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| |||| |||||||| || | ||||| |||||| ||||| || || ||
Sbjct 325838 CAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACTACAAC 325897
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| || | || | ||||| || || ||||| ||||| |||
Sbjct 325898 AT-TCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGGT 325945
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || ||||| |||||||| || || || ||||| || ||||
Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| ||||| || | ||| || |||||||| ||||| || || ||||| |||
Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|||||||| || | ||||||||| || | ||||| ||||| || || || || ||
Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| || | || | ||||| || || ||||| ||||| |||
Sbjct 326354 AT-TCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGGT 326401
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || |||||||||||||||||||| || ||||| || |||
Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | |||| || || || | ||| || |||||||| ||||| || || ||||| ||
Sbjct 326462 GACACTATTGACAATGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAG 326521
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||||| ||||||| || ||||| || | ||||| ||||| || || || || |||
Sbjct 326522 CAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACAAT 326581
Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| || ||| || | || | ||||| || || || |||||||| |||
Sbjct 326582 AT-TCAAAAGGAATCCACTTTACATTTGGTTTTGAGGTTAAGAGGTGGT 326629
Score = 127 bits (140), Expect = 3e-24
Identities = 168/231 (73%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| || |||| || || || || || |||||||| || || |||||| ||
Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | || ||||| || | ||| || |||||||| ||||| || |||||||| ||
Sbjct 325549 TGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCA 325608
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||||||||||| || ||||| || | ||||| ||||| || || || || |
Sbjct 325609 GCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACA- 325667
Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
| ||||||| || | || | |||||||| || ||||| ||||| |||
Sbjct 325668 -ACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGGT 325717
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731871917664400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |