Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 156 8e-33 seq8 143 5e-29 >seq3 Length=1410883 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || ||||| || |||| ||| || ||| ||||| ||||| Sbjct 317555 ACCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGA 317614 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||| ||||||||||| ||||||||||| || ||||||||||| Sbjct 317615 CAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGG 317674 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || ||||| ||||| || ||||| |||| || || ||||| || Sbjct 317675 AATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGAC 317734 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 |||| ||||| || ||||| ||||| || |||| || || ||||| || Sbjct 317735 CTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 Score = 154 bits (170), Expect = 3e-32 Identities = 510/792 (64%), Gaps = 24/792 (3%) Strand=Plus/Minus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 ||| |||||||| |||||| | ||| || ||||| ||| || |||||| Sbjct 929385 CATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACCCAAAGCAACTAATAA 929326 Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| || |||||||| |||||||| |||| || | |||||||||||| || Sbjct 929325 TCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAAAGA 929266 Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771 | ||||||||||| | |||||| ||||| || || |||| | || ||| | Sbjct 929265 GACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAATCCT 929206 Query 49772 aattatattattttttgataatttatattta--atatgattcgcatatattaaACATGCA 49829 | | |||| | || | | ||| | |||| | | | ||| || ||| Sbjct 929205 CTCAACA--ATTTCTGCATCTGGTCTGTTTTGCAAATGA---GAGAACAATAAGCAAGCA 929151 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 || |||||||||||||| || || || | || ||||| ||| || || | |||||| Sbjct 929150 AAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGC 929091 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 || | |||||||| || | ||| || || |||||||| || | ||||| |||||| Sbjct 929090 ATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCC 929031 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAA 50009 || ||| || || || | | | | | || || | | | ||||| ||||| Sbjct 929030 TCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATCCAT 928971 Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069 | | |||||| || || || || |||||| | || || || || || || ||||| || Sbjct 928970 CTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAA 928911 Query 50070 ---TCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATT 50123 ||| | |||| || || |||||||| || || Sbjct 928910 AAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCA------ATCAATAAAGAGTAGGTT 928857 Query 50124 TCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC 50183 || || || | | ||||| ||||||||| |||||| | | ||||||| | Sbjct 928856 TCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACT 928797 Query 50184 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 50243 |||||||| | |||| ||||| || ||||| ||||||||||||||||| || Sbjct 928796 TGAACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCA 928737 Query 50244 AAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCC--CAAG 50301 ||||| ||||| | | ||| ||| ||||||| || ||||| || ||| | || Sbjct 928736 AAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAG 928677 Query 50302 --ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTT 50359 || |||| || || || || | ||| || ||||||||||| || | | ||| Sbjct 928676 TCATGCAAG-TCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTT 928618 Query 50360 TTTATACATTTG 50371 ||| |||||||| Sbjct 928617 TTTGTACATTTG 928606 >seq8 Length=1028784 Score = 143 bits (158), Expect = 5e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | || || ||||||||||| | || ||| || || || || || Sbjct 325947 ATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 325889 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 ||||||||||| | || || ||||||||||| || || |||||||| ||||| || || Sbjct 325888 AGATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGG 325829 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| |||||||| |||||| | || || || || | || || || || Sbjct 325828 TGGGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTC 325769 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| |||||||| |||||||| || || || | || || ||||| Sbjct 325768 GACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 143 bits (158), Expect = 5e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | || || ||||||||||| | || ||| || || || || || Sbjct 326403 ATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATGTTGTAGTC 326345 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || |||| | | || |||||||||||||| |||||||||||||| ||||| || || Sbjct 326344 GGACAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGG 326285 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| |||||||| || ||| | || || || |||| ||| || || || Sbjct 326284 TGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTC 326225 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| || || || || || | || || ||||| Sbjct 326224 AACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 140 bits (154), Expect = 6e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||||||||| | | || || ||||||||||||| || ||| || || || || || Sbjct 326175 ATACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGA-ATGTTGTAGTC 326117 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 |||||||||| | || || |||||||||||||| || || ||||| ||||| || || Sbjct 326116 TGATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGG 326057 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| |||||||| || ||| | || || || |||| || || || || Sbjct 326056 TGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTC 325997 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| || ||||| ||||| || || || | || || ||||| Sbjct 325996 AACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | | || |||||||||||||||| || || ||| || || || Sbjct 325719 ATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCG 325660 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | | || ||||||||||||||||| || || ||||| || || || || Sbjct 325659 GACAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGA 325600 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| | || || || || | || || ||||| Sbjct 325599 GGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCG 325540 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||||| || ||||| ||||| || |||| || || |||||| Sbjct 325539 ACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489 Score = 138 bits (152), Expect = 2e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCA 192366 |||||||||| | | || || ||||||||||| | || ||| || ||||| || || Sbjct 326630 TACCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGA-ATATTGTAGTCC 326572 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||| | || ||||||||||||||||| || || || || || || || ||| Sbjct 326571 GACAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGT 326512 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| | || ||||| |||| || || || || Sbjct 326511 GGAATACCTTCCTTATCTTGGATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCA 326452 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||| ||||| ||||| || || || | || || ||||| Sbjct 326451 ACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479886477150