Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3 152 2e-31 seq1 109 2e-18 seq2 105 2e-17 >seq3 Length=1410883 Score = 152 bits (168), Expect = 2e-31 Identities = 271/395 (69%), Gaps = 3/395 (1%) Strand=Plus/Minus Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038 ||||||||||||| | || | ||| || |||||| | ||| ||| || | ||| Sbjct 802036 CCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTAC 801977 Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095 | |||||| |||| || ||| ||||| ||||| || || ||||| || || || Sbjct 801976 AAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTGTTGTTA 801917 Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155 ||||| | | ||| ||||||||||| ||||| || || ||||||||| ||| | | | Sbjct 801916 AAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCA 801857 Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215 || | ||| |||| |||||| || || | ||||||||||| | | || ||||| | Sbjct 801856 CCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAA 801797 Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275 || || ||| | || | | ||||| || || || || || | ||| | | | Sbjct 801796 GCACACGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCAACCAAG 801737 Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335 |||||||| | ||| ||| ||||||| ||||| ||||| | || || | ||||| Sbjct 801736 AAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAAGCATGT 801677 Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | || || | | |||||| |||| ||| ||||| Sbjct 801676 GTGAAGTATCTTTGAGACATGTAATTGTAAGTCTC 801642 Score = 123 bits (136), Expect = 7e-23 Identities = 385/588 (65%), Gaps = 11/588 (2%) Strand=Plus/Plus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 |||||| |||| ||||| | | |||| || ||||| ||||| |||||| | | | Sbjct 928570 TTTGTTTTGTTTCCAATCAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGCT 928629 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCC-- 133193 | |||||||||| | ||| | || || || ||| ||||| | | | Sbjct 928630 TCATTTTGGACTGCTGAGGAAATTGACTTGGGTAAGGACTTGCATGACTGGAAGGACAAG 928689 Query 133194 -TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252 | | || |||||| ||| ||||| | || ||||| || |||||||| |||| Sbjct 928690 TTAAATGACAATGAAAGGTTTTTCATTTCAAGAATCTTAGCTTTCTTTGCTGCATCTGAT 928749 Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGC 133311 |||||||| || || || || | ||| | | ||||||||| | | ||||| Sbjct 928750 GGTATTGTCAACGAGAACTT-GGTTGAGAATTTCTCAGCTGAAGTTCAAGTTCCAGAAGC 928808 Query 133312 CCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTAC 133371 | ||||||||| | || || |||||| |||||||| || || || ||| Sbjct 928809 CAAATGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTTT 928868 Query 133372 TCTAATTGATACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCAACGCCATT 133429 | |||||||| || ||||| ||| | ||| || || | || || || ||| Sbjct 928869 ATTGATTGATACCTATATCAAGGATCCAAA--AGAGGCTGACTTTTTGTTTAATGCAATT 928926 Query 133430 AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAG 133489 | | |||| ||||| || ||||| ||||||||||| | | ||||||| | || | Sbjct 928927 GACAACATTCCATGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACGATGAA 928986 Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549 ||| || | | ||||| |||||||| |||| || ||||| ||||| |||||| Sbjct 928987 GATGCATTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCTTCAGT 929046 Query 133550 GGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 ||| | || ||| ||||| || ||| | || ||| | ||||| | || || || || Sbjct 929047 GGTTCATT-TGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTACATT 929105 Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656 ||||||||| | |||| || || || | | || || || ||||| Sbjct 929106 CTCTAACGAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGC 929153 >seq1 Length=1903380 Score = 109 bits (120), Expect = 2e-18 Identities = 248/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATC 288947 |||||||| ||||||||| | || || ||||| | | || || | ||| ||||| Sbjct 847222 TATATCGGGTCTGTTTGTACCAGCTAAAACAACTACATGATCTGTGGTGTCAAACCCATC 847163 Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC 289007 ||| | || ||| ||||| || | || |||||||||||| ||| || | Sbjct 847162 CATCTCAACGAGAACTTGGTTAAGAGTGTTCTCTCTTTCATCATTTCCACCCATT---TT 847106 Query 289008 ACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG 289067 || || | |||| ||||| | |||||| || ||||||||||| || | | || Sbjct 847105 GCC---ATTTCCTCTTTCCTTACCGATAGCATCTATCTCGTCAATGAAGATAATAGCAGG 847049 Query 289068 AGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATA 289127 || | | ||| || | ||||| || | || || || ||||| | |||||| | Sbjct 847048 AGCCATATCTCTGGCCGTCTTGAATAAATCACGGACTCGAGAAGCTCCTACACCAACGAA 846989 Query 289128 CATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTAC 289187 |||||| |||||||| || | || ||| | ||||| ||| ||||| || || Sbjct 846988 CATTTCAACAAATTCTGAGCCTGAAACTGATAAGAATGGAACACCAGCTTCACCAGCGGT 846929 Query 289188 TGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 ||| |||| ||||| |||||||| || ||||| || || ||| | | |||| | || Sbjct 846928 GGCCTTCGCTAGAAGAGTCTTACCAGTACCAGGAGGACCTGATAAGATAGCTCCTCTGGG 846869 Query 289248 TACTTTTGCCCC 289259 || ||| || || Sbjct 846868 TATTTTGGCACC 846857 >seq2 Length=1812747 Score = 105 bits (116), Expect = 2e-17 Identities = 200/292 (68%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| || ||| |||||||||| | ||| || | | ||| ||||| || ||||| Sbjct 1067126 ATCATAGTGAACCATGATGTCTTCCAAAGCCTTTATAATTCTACGTTGAATGTATCCAGT 1067185 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||| ||||| |||||||| ||||| ||||||| |||| ||||||||||| Sbjct 1067186 TTCAGCAGTTTTAACAGCGGTATCAATAAGACCTTCACGACCTGCCATCGCATGGAAGAA 1067245 Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731 | ||| | || | |||||| || || || | ||||| ||||| | || | Sbjct 1067246 GAACTCCTGAGGAGTTAAGCCCCTTAAGTAA-GAATTTTCAACAAAACCCTTTGATTCCG 1067304 Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791 | || | | | ||| ||||||||||||| | |||| | | || | || || | Sbjct 1067305 GAGAGTAATTGTCCTTTGTAAAGTGTGGCAAAGATCTGTCAGAAAATCCAAAGGGAATCC 1067364 Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||| || ||||| | ||||| || | || | | ||| ||||| ||||| Sbjct 1067365 TCTTACCTTCAACAATTTGCTGACCGACACATGCAGACATTTGCGATATATT 1067416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817430281033