Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3 152 2e-31
seq1 109 2e-18
seq2 105 2e-17
>seq3
Length=1410883
Score = 152 bits (168), Expect = 2e-31
Identities = 271/395 (69%), Gaps = 3/395 (1%)
Strand=Plus/Minus
Query 155979 CCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATAC 156038
||||||||||||| | || | ||| || |||||| | ||| ||| || | |||
Sbjct 802036 CCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTAC 801977
Query 156039 ATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTG 156095
| |||||| |||| || ||| ||||| ||||| || || ||||| || || ||
Sbjct 801976 AAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAACGAGCTGTGTTGTTA 801917
Query 156096 AAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAA 156155
||||| | | ||| ||||||||||| ||||| || || ||||||||| ||| | | |
Sbjct 801916 AAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCA 801857
Query 156156 CCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGA 156215
|| | ||| |||| |||||| || || | ||||||||||| | | || ||||| |
Sbjct 801856 CCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAA 801797
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||| | || | | ||||| || || || || || | ||| | | |
Sbjct 801796 GCACACGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCCTTCATGGCAACCAAG 801737
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
|||||||| | ||| ||| ||||||| ||||| ||||| | || || | |||||
Sbjct 801736 AAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAAGCATGT 801677
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTC 156370
| || || | | |||||| |||| ||| |||||
Sbjct 801676 GTGAAGTATCTTTGAGACATGTAATTGTAAGTCTC 801642
Score = 123 bits (136), Expect = 7e-23
Identities = 385/588 (65%), Gaps = 11/588 (2%)
Strand=Plus/Plus
Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135
|||||| |||| ||||| | | |||| || ||||| ||||| |||||| | | |
Sbjct 928570 TTTGTTTTGTTTCCAATCAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGCT 928629
Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCC-- 133193
| |||||||||| | ||| | || || || ||| ||||| | | |
Sbjct 928630 TCATTTTGGACTGCTGAGGAAATTGACTTGGGTAAGGACTTGCATGACTGGAAGGACAAG 928689
Query 133194 -TTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGAT 133252
| | || |||||| ||| ||||| | || ||||| || |||||||| ||||
Sbjct 928690 TTAAATGACAATGAAAGGTTTTTCATTTCAAGAATCTTAGCTTTCTTTGCTGCATCTGAT 928749
Query 133253 GGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGC 133311
|||||||| || || || || | ||| | | ||||||||| | | |||||
Sbjct 928750 GGTATTGTCAACGAGAACTT-GGTTGAGAATTTCTCAGCTGAAGTTCAAGTTCCAGAAGC 928808
Query 133312 CCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTAC 133371
| ||||||||| | || || |||||| |||||||| || || || |||
Sbjct 928809 CAAATGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTTT 928868
Query 133372 TCTAATTGATACTTACATCAAAGATACCGTCCAGAAGC--ACAAACTATTCAACGCCATT 133429
| |||||||| || ||||| ||| | ||| || || | || || || |||
Sbjct 928869 ATTGATTGATACCTATATCAAGGATCCAAA--AGAGGCTGACTTTTTGTTTAATGCAATT 928926
Query 133430 AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAG 133489
| | |||| ||||| || ||||| ||||||||||| | | ||||||| | || |
Sbjct 928927 GACAACATTCCATGTATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACGATGAA 928986
Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549
||| || | | ||||| |||||||| |||| || ||||| ||||| ||||||
Sbjct 928987 GATGCATTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCTTCAGT 929046
Query 133550 GGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608
||| | || ||| ||||| || ||| | || ||| | ||||| | || || || ||
Sbjct 929047 GGTTCATT-TGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTACATT 929105
Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
||||||||| | |||| || || || | | || || || |||||
Sbjct 929106 CTCTAACGAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGC 929153
>seq1
Length=1903380
Score = 109 bits (120), Expect = 2e-18
Identities = 248/372 (67%), Gaps = 6/372 (2%)
Strand=Plus/Minus
Query 288888 TATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATC 288947
|||||||| ||||||||| | || || ||||| | | || || | ||| |||||
Sbjct 847222 TATATCGGGTCTGTTTGTACCAGCTAAAACAACTACATGATCTGTGGTGTCAAACCCATC 847163
Query 288948 CATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATC 289007
||| | || ||| ||||| || | || |||||||||||| ||| || |
Sbjct 847162 CATCTCAACGAGAACTTGGTTAAGAGTGTTCTCTCTTTCATCATTTCCACCCATT---TT 847106
Query 289008 ACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG 289067
|| || | |||| ||||| | |||||| || ||||||||||| || | | ||
Sbjct 847105 GCC---ATTTCCTCTTTCCTTACCGATAGCATCTATCTCGTCAATGAAGATAATAGCAGG 847049
Query 289068 AGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATA 289127
|| | | ||| || | ||||| || | || || || ||||| | |||||| |
Sbjct 847048 AGCCATATCTCTGGCCGTCTTGAATAAATCACGGACTCGAGAAGCTCCTACACCAACGAA 846989
Query 289128 CATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTAC 289187
|||||| |||||||| || | || ||| | ||||| ||| ||||| || ||
Sbjct 846988 CATTTCAACAAATTCTGAGCCTGAAACTGATAAGAATGGAACACCAGCTTCACCAGCGGT 846929
Query 289188 TGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247
||| |||| ||||| |||||||| || ||||| || || ||| | | |||| | ||
Sbjct 846928 GGCCTTCGCTAGAAGAGTCTTACCAGTACCAGGAGGACCTGATAAGATAGCTCCTCTGGG 846869
Query 289248 TACTTTTGCCCC 289259
|| ||| || ||
Sbjct 846868 TATTTTGGCACC 846857
>seq2
Length=1812747
Score = 105 bits (116), Expect = 2e-17
Identities = 200/292 (68%), Gaps = 2/292 (1%)
Strand=Plus/Plus
Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612
|||||| || ||| |||||||||| | ||| || | | ||| ||||| || |||||
Sbjct 1067126 ATCATAGTGAACCATGATGTCTTCCAAAGCCTTTATAATTCTACGTTGAATGTATCCAGT 1067185
Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672
| || ||||| ||||| |||||||| ||||| ||||||| |||| |||||||||||
Sbjct 1067186 TTCAGCAGTTTTAACAGCGGTATCAATAAGACCTTCACGACCTGCCATCGCATGGAAGAA 1067245
Query 302673 TAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGG 302731
| ||| | || | |||||| || || || | ||||| ||||| | || |
Sbjct 1067246 GAACTCCTGAGGAGTTAAGCCCCTTAAGTAA-GAATTTTCAACAAAACCCTTTGATTCCG 1067304
Query 302732 GCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATAC 302791
| || | | | ||| ||||||||||||| | |||| | | || | || || |
Sbjct 1067305 GAGAGTAATTGTCCTTTGTAAAGTGTGGCAAAGATCTGTCAGAAAATCCAAAGGGAATCC 1067364
Query 302792 GCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
||| || ||||| | ||||| || | || | | ||| ||||| |||||
Sbjct 1067365 TCTTACCTTCAACAATTTGCTGACCGACACATGCAGACATTTGCGATATATT 1067416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817430281033
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |