Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2 113 1e-19 seq3 93.3 1e-13 >seq2 Length=1812747 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 |||||||| || ||||| ||||||||||||| ||||||||||||| |||||||| | Sbjct 1068355 TTCAATAGACAGCCATCTTTGCATAAAATGTCAATGATGGCTCATAGGGTCAAAGTCATG 1068296 Query 305396 TCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGAT 305455 || | ||||| |||| ||| | || | | | || ||||| |||||||| ||| Sbjct 1068295 CCTTATTCTACATTCAGATTGAATTTGTCTGTTACTTCTCCATATAACGCGGATTTCGAT 1068236 Query 305456 GGAGATGAAATGAATATGCATGTACCTCAATC 305487 || |||||||||||| |||| || || ||||| Sbjct 1068235 GGTGATGAAATGAATTTGCACGTTCCCCAATC 1068204 >seq3 Length=1410883 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/176 (73%), Gaps = 5/176 (3%) Strand=Plus/Minus Query 305312 TTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATG 305371 ||||| ||| |||| || || || ||||| ||||| || |||||| ||||||| Sbjct 230044 TTGAA-GACTTTGATATAGTACTTTTTAATAGACAACCTTCGTTGCATAGGTTGTCTATT 229986 Query 305372 ATGGCTCATAAAGTCAAAGTATTATC-TGGATTGACATTTC-GATTAAATGTAAGTGCTT 305429 | | ||| | | || | || | |||| || |||| |||| || | | ||| || Sbjct 229985 TTATCACATTATGCCAGAATAAAGCCATGGA--GAACTTTCAGATTGAACGAATGTGTTT 229928 Query 305430 GTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||| |||||||||||||| |||||||||||||||||||| | |||||||| ||| Sbjct 229927 GTACTCCTTATAATGCGGACTTTGATGGAGATGAAATGAACCTACATGTACCCCAA 229872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812663145649