Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8 118 7e-22 seq3 96.9 2e-15 >seq8 Length=1028784 Score = 118 bits (130), Expect = 7e-22 Identities = 168/233 (72%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || || ||||||| ||| || ||||| |||||||| ||||| Sbjct 325717 ACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGA 325658 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| ||||||||||| || || |||||||| | ||||| ||| | || Sbjct 325657 CAAGGTTCTTCCGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGG 325598 Query 33642 CACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| || || | | || || || || | ||| | |||||| ||||| Sbjct 325597 AATACCTTCCTTATCTTGGATCTTACTCTT--GACGTTGTCGATGGTGTCAGAGGATTCG 325540 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || || | || || || ||||||||||| || || || ||||| ||||| || Sbjct 325539 ACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATTGT 325487 Score = 109 bits (120), Expect = 4e-19 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || |||||||||| |||| || ||||| |||||||| || || Sbjct 325945 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGA 325886 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | |||| || |||||||| ||||| ||||| || | || || ||| | || Sbjct 325885 TAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGG 325826 Query 33642 CACACCTTCTTTGTCGGCAATTTT-CTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| || || |||||| || || || | ||| | |||||| || || Sbjct 325825 GATACCTTCCTTATCTTGAATTTTACTCTT--GACGTTGTCGATTGTGTCGGAAGACTCG 325768 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || ||||| || || || || || ||||| |||||| Sbjct 325767 ACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCATA 325717 Score = 104 bits (114), Expect = 2e-17 Identities = 174/247 (70%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 33508 CAAATAAAATC--GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTT 33565 ||| ||| ||| || ||||||||| || | || |||||||||| |||| || |||| Sbjct 326645 CAAGTAAGATCTAGTTACCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTT 326586 Query 33566 GTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAAC 33625 | || ||||| || || | ||| | |||| ||||||||||| || || |||||||| | Sbjct 326585 GAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACC 326526 Query 33626 GCTGCTGATCTTGCGGCACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-AC 33683 ||||| ||| | || | |||||| || || | | || || || |||| ||| | Sbjct 326525 TTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTACTCTT--GACATTGTCAAT 326468 Query 33684 GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGAT 33743 ||||| || || || || | || || ||||| || || || || || || ||||| Sbjct 326467 AGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGAT 326408 Query 33744 CTGCATA 33750 |||||| Sbjct 326407 TTGCATA 326401 Score = 100 bits (110), Expect = 2e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || |||||||||| |||| || ||||| |||||||| ||||| Sbjct 326401 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGA 326342 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || | | |||| ||||||||||| |||||||| || || | || || ||| | || Sbjct 326341 CAAGGTTCTTCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGG 326282 Query 33642 CACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| || || | | || || || || | ||| | || || || || Sbjct 326281 GATACCTTCCTTATCTTGGATCTTACTCTT--GACGTTGTCGATAGTATCAGAAGACTCA 326224 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| || || || || || || || || |||||| Sbjct 326223 ACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCATA 326173 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || |||||||||| ||| || ||||| |||||||| || || Sbjct 326173 ACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGA 326114 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| | |||| || |||||||| || || |||||||| | || || ||| | || Sbjct 326113 TAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGG 326054 Query 33642 CACACCTTCTTTGTC-GGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | |||||| || || | | || || || || | ||| | ||||| || || Sbjct 326053 GATACCTTCCTTATCTTGGATCTTACTCTT--GACGTTGTCAATAGTGTCAGAGGACTCA 325996 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | ||||| ||||| || || || || || || ||||| |||||| Sbjct 325995 ACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCATA 325945 >seq3 Length=1410883 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||||||| | || |||||||| | || ||| ||||| ||||| || || | Sbjct 317554 CACCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAG 317613 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || | | || ||||| ||||| || || || || || | |||||||| | | Sbjct 317614 ACAAGGTTCTGCCATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTG 317673 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| |||||| || | |||| ||| | ||||| ||||| Sbjct 317674 GAATACCTTCCTTGTCTTGAATTTT-TGACTTGACATTGTCAATAGTGTCAGAGGATTCG 317732 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || ||||||||||| || || || || || ||||| Sbjct 317733 ACCTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCAT 317782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703963945280