Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8 116 9e-21 seq3 98.7 2e-15 >seq8 Length=1028784 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| |||||||||||||| || |||||| || |||| || ||| Sbjct 326198 ACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCTGATACTATCGACAACGTCAAGAGT 326257 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || ||| |||||| | ||||| ||||| || Sbjct 326258 AAGATCCAAGATAAGGAAGGTATCCCACCAGACCAACAAAGATTAATCTTTGCCGGTAAA 326317 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| ||||| || ||| |||| |||||| | || || || || ||| | || Sbjct 326318 CAATTGGAAGACGGAAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACAT 326377 Query 206374 CTTGTTTTGAGA 206385 | ||||||||| Sbjct 326378 TTGGTTTTGAGA 326389 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| |||||||||||||| || |||||||| | || || ||| Sbjct 325970 ACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCTGACACTATTGACAACGTCAAGAGT 326029 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| || || ||| |||||| | || ||||| || || Sbjct 326030 AAGATCCAAGATAAGGAAGGTATCCCACCAGACCAACAAAGATTGATTTTCGCTGGTAAA 326089 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || || ||||| || || || || | || |||||| | || || || |||||| | || Sbjct 326090 CAATTAGAAGACGGCAGAACATTATCAGACTACAACATTCAAAAGGAATCTACTTTACAT 326149 Query 206374 CTTGTTTTGAGA 206385 | ||||||||| Sbjct 326150 TTGGTTTTGAGA 326161 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || |||||||| || ||||||||||| || |||||||| | || || ||| Sbjct 326426 ACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCTGACACTATTGACAATGTCAAGAGT 326485 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| || ||||| ||| || ||| ||||| | || ||||| || || Sbjct 326486 AAGATCCAAGATAAGGAAGGTATTCCACCAGACCAGCAAAGGTTGATTTTCGCTGGTAAA 326545 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||| || || || ||| | || ||||| | || || || || ||| | || Sbjct 326546 CAATTGGAAGACGGTAGAACATTGTCGGACTACAATATTCAAAAGGAATCCACTTTACAT 326605 Query 206374 CTTGTTTTGAG 206384 | |||||||| Sbjct 326606 TTGGTTTTGAG 326616 >seq3 Length=1410883 Score = 98.7 bits (108), Expect = 2e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || || || || || || ||| |||||||| | || || ||| | Sbjct 317758 ACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCTGACACTATTGACAATGTCAAGTCA 317699 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||| ||| || || |||||| | |||||||| || || Sbjct 317698 AAAATTCAAGACAAGGAAGGTATTCCACCTGATCAGCAAAGATTAATCTTCGCTGGTAAA 317639 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||||||||| || || ||| | || || ||| |||| || |||||||| | || Sbjct 317638 CAGTTGGAAGATGGCAGAACCTTGTCTGACTATAACATCCAAAAGGAGTCTACCTTGCAT 317579 Query 206374 CTTGTTTTGAGA 206385 | || |||||| Sbjct 317578 TTGGTCTTGAGA 317567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181820663721289