Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq8 102 8e-17 seq3 98.7 9e-16 >seq8 Length=1028784 Score = 102 bits (112), Expect = 8e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| | |||||||||||||| | || || |||||||||||||||||| || ||| | Sbjct 326392 CAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCT 326333 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| | |||||||||| | |||||| | ||||| ||||| || || ||||| Sbjct 326332 TCCGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTC 326273 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||||| || || || | | || | |||||| | | ||| ||||| | || Sbjct 326272 CTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGT 326213 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| || |||| ||| || | |||||| ||||| Sbjct 326212 GATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTAC 131963 ||| | |||||||||||||| | || || ||||||||||||||||| | | ||| | Sbjct 325936 CAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCT 325877 Query 131964 GCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 || ||||| | |||||||||| | |||| | ||||| ||||| || || |||| Sbjct 325876 GC-CGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTT 325818 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 | ||||| |||||| || | | || | || |||| | ||| || || | | Sbjct 325817 CCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGG 325758 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | || |||||||||| ||| || | ||| || ||||| Sbjct 325757 TAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 >seq3 Length=1410883 Score = 98.7 bits (108), Expect = 9e-16 Identities = 283/426 (66%), Gaps = 16/426 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCT-GAGATACACATTGCTAGTGAAAGG 146951 ||||| | ||| ||||| || |||| || | ||| ||| || | || |||| | || Sbjct 803002 TTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAG-TAGATGTTCGAAGTGTATGG 802944 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 |||||| | || || |||||||| ||||| | |||| || |||||||| || || Sbjct 802943 CTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGAGCAAC 802884 Query 147012 CAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCA 147071 | |||||| |||| || ||| | | ||||| | |||||| || | ||||||||| Sbjct 802883 AAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCAATGTGTCCCAGTCCCA 802824 Query 147072 CA--TCGACGAGGGCGTCACGTTCCACATGTCGTACTG---GAGCACTCCTCGA--CTGG 147124 || ||| | ||| | || ||||| ||| ||||| ||| || | |||| ||| Sbjct 802823 CAATTCG--GTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAG-ACCCTTCGATGCTG- 802768 Query 147125 CGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCT 147184 |||| ||| || | || ||| | || ||| | ||||| ||| | ||||| Sbjct 802767 -GGGA--GCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCT 802711 Query 147185 CGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGC 147244 | | || |||| ||| || || || |||||| |||| | | | ||||||| Sbjct 802710 CCACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAG 802651 Query 147245 TCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGA 147304 ||| | |||| | || | || ||||||||||| | ||| |||| |||||| | | Sbjct 802650 AATCGAATGGCAACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAA 802591 Query 147305 TAGGTC 147310 | |||| Sbjct 802590 TTGGTC 802585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611146381240