Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 280 2e-70 >seq3 Length=1410883 Score = 280 bits (310), Expect = 2e-70 Identities = 1340/2107 (64%), Gaps = 67/2107 (3%) Strand=Plus/Minus Query 68413 TAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTG 68472 |||||||||||||| |||| || |||| |||||||||||||| || | ||| Sbjct 803302 TAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAGGTCAACTTG 803243 Query 68473 GAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCT 68532 | || || || ||||| || | ||| || ||| ||||||||||| | Sbjct 803242 CCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGATGAAAGCAGAT 803183 Query 68533 CTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATC 68592 || || || ||||| | || ||| |||||| | || ||||| | || || | | Sbjct 803182 CTGTCGGCTGCCATGTCGATGATATGCTTTTGGGATATCTCCCACACGGTTTTGTACAAT 803123 Query 68593 TGTTTGATATCATCTGGAAGGCTCGTATT---TTGAATGGATCCACCATCGGATATAATT 68649 ||||||| |||||||||| | | | ||| || || || || || || || Sbjct 803122 TGTTTGAGCTCATCTGGAATGTTGGGCAACGATTGGATCGAACCGTTATTTGAAATGATA 803063 Query 68650 ATATTCTTGATCTCATCATTCCA------CAATTTTCTCTCCGTTAAAACTCTAAGGAGA 68703 |||| || || | || ||||| ||| || | || || || || Sbjct 803062 TTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCA-----AATCCTTCAACAAG- 803009 Query 68704 TGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTA 68763 | || || |||||||| || || |||| || ||||| | | ||| || || || Sbjct 803008 TATGGGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTCGAAGTG 802949 Query 68764 TATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGT 68823 ||||| || | |||| || || || | |||||| | || || ||||| |||||||| Sbjct 802948 TATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGA 802889 Query 68824 GCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAA 68883 || || | || ||||| | |||||| || || || | || | |||| ||| | Sbjct 802888 GCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCA-ATGTGTCCCA 802830 Query 68884 -TCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGC 68942 ||||| | || | || | ||| | || || || | | || || ||| Sbjct 802829 GTCCCACAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTCGATGC 802770 Query 68943 ATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTC 69002 || || | || || || || | ||||| ||| || | ||| |||||| Sbjct 802769 TGGGGAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCTC 802710 Query 69003 TAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACT 69062 | ||||| | || ||||| || || || | | || | || |||||| || Sbjct 802709 CACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAGA 802650 Query 69063 ATCGAATGGATAATGTAAAAGA-ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGA 69121 ||||||||| || | |||| || || ||||| || | || || || || | | | | Sbjct 802649 ATCGAATGGC-AACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAA 802591 Query 69122 TAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 69181 | ||||| |||||| | || || || | |||||||||| |||||||||||| || | Sbjct 802590 TTGGTCTGTGTCTCATGTTAGATCTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAA 802531 Query 69182 TAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 69241 | ||| | || | || || || ||||| | || | ||||| ||||| | Sbjct 802530 TGATTCTGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCAAAATTAT 802471 Query 69242 ATC--------GTC-CATCTATA---ACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 | | || |||| | ||||| | || | || |||||| | |||| Sbjct 802470 ACCAGGTTGAAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCCAAGTTAC 802411 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 | || || ||||||| | | | |||| | ||||| ||| | ||| ||| Sbjct 802410 ATACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATT 802351 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | ||| | |||| ||| | || ||| |||| |||||||| || || || ||||| || | Sbjct 802350 TAATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGA 802291 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTA 69469 | |||||||| || || | |||| || | |||| | ||| | | ||| || | Sbjct 802290 ATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATAACTTCTGAGCCTTGA 802231 Query 69470 TTACGGTCT---TGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCAT 69526 |||||| | ||| || ||| |||| |||| | || | | |||||| |||| Sbjct 802230 ---CGGTCTGTCTTCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCAT 802174 Query 69527 CTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCAT 69586 | || | ||| |||| || ||| |||||| || | | ||| | ||| | | || Sbjct 802173 CGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTAT 802114 Query 69587 CATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGG 69646 | || |||| |||||| || | ||| || ||||| | |||| ||| | ||||||| Sbjct 802113 TTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGG 802054 Query 69647 TTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAAT 69706 ||| |||||||| || || ||| || ||| || | || || | |||||| | || Sbjct 802053 CTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCAT 801994 Query 69707 GCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGT 69766 |||||||||| | || | || | | | || |||| ||| ||||| || ||||| | || Sbjct 801993 GCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGT 801934 Query 69767 ATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTG 69826 | | || ||||| ||| |||| | | ||| ||||||||||| || || |||| || | Sbjct 801933 AACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGG 801874 Query 69827 TTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTG 69886 |||| | ||| || || ||| ||||||||| || | ||| || || || | Sbjct 801873 TTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAG 801814 Query 69887 CCATTTTAGAGATTAGAGCACAACGT-TTCAATGTGTCATATATACCCTCTATGCTATCA 69945 | | || || || | ||||| |||| ||||| |||||||| ||||| || ||| || Sbjct 801813 CACTCTTGGAAATCAAAGCAC-ACGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCT 801755 Query 69946 TCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAAT 70005 || ||||| || | || || ||||||||| | ||| || || ||||| || Sbjct 801754 TCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAAC 801695 Query 70006 AATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCT 70065 || || || || || || ||||| || ||| ||| | |||||| || |||||| | Sbjct 801694 AAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTAATTGTAAGTCTCAATAACC 801635 Query 70066 GATTCTATATC-CCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCG 70124 | ||||| | || |||||| || || || || | ||| | || || ||||||| Sbjct 801634 CGTGGGATATCATCTCT-ATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCT 801576 Query 70125 TTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAA 70184 || | ||| | | ||||| | ||| ||| | || | || || || || || Sbjct 801575 CTCGGCAACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAA 801516 Query 70185 ATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTT 70244 |||||||| ||||| | ||| ||| |||| |||| || | | ||| | || Sbjct 801515 GTAGTTGTAGTTGAAGTCGCGATCGAAAACAATAGCAGAGTTCAACTCATC---AGCATT 801459 Query 70245 GGTAACTATATCCATAACAGTAGGT-------GAGATAATCGGAGATCGTTTACCATTTT 70297 || || | | ||| | |||||| ||||| || ||||| | || | | Sbjct 801458 GG---CTTGAACAATATC-GTAGGTCTCCTTGGAGATCATGGGAGAATGCAGGTCAGTCT 801403 Query 70298 TAGGATTAACATAGTTGAATAAATCTTCCATTACATCACT-----AAATAGtttttttGT 70352 | || || | ||| | | || | || | ||||| |||| ||| | || |||| Sbjct 801402 TTGGGTTGATATACTCG--TACAACTGC--TTACA-CACTTGTGAAAACTGCTTGATTGT 801348 Query 70353 TTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTG 70412 || ||| || || || || | ||| ||||||||||| | |||||| ||||| || || Sbjct 801347 TTGCTTATGCAAGTTGGAAACGGCAATTCTGGCTGCCAAAATAGCGTAGTCTGGGTGAAT 801288 Query 70413 TGTAGTACAAGTA-GCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACTC 70471 || || || ||| || || | || || ||||| | ||||| || | || ||||| | Sbjct 801287 CGTGGT-CATGTATGCCGCAGTCTCAGCGGCTAAGTTGTCTAACTCGGTGGTAGTAACAC 801229 Query 70472 CGTTATA 70478 | | ||| Sbjct 801228 CATGATA 801222 Score = 250 bits (276), Expect = 3e-61 Identities = 597/898 (66%), Gaps = 20/898 (2%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||| ||||| ||||| || |||| || | || || ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429 ||| || || ||||||||||||||||| ||||| || |||| || |||| ||| Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTAC- 929342 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 || || ||| |||||||||||||||||||| | ||| ||||| | Sbjct 929341 -CCAAAGCAACTAAT-AATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCT 929284 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 |||||| || | | || |||| || || || | ||| || ||||| ||| || Sbjct 929283 ATTCATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAAC 929224 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 ||| || || || ||| || | || || ||| | ||||| || Sbjct 929223 GGCTTCGGTGATAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAA 929164 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 || |||||| || |||||| ||||| || |||||||| | ||| ||||||||||| || Sbjct 929163 CAATAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAA 929104 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 ||| || || ||||| | ||| | ||| || | ||| || || | ||||| || ||| Sbjct 929103 TGTAAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACT 929044 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 ||||| || || || || || || || |||||||| | || ||| | || ||| | Sbjct 929043 GAAGAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTC 928984 Query 39790 AT-GT--ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 || || ||||| || ||||| ||||| |||||||| | ||| || || | || || Sbjct 928983 ATCGTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAAT 928924 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 |||||||| | | | | || | ||| || | ||| ||||| || || | | Sbjct 928923 TGCATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGA 928864 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 || ||||||| ||||| || || ||| || |||||||| ||||| ||| | ||||| Sbjct 928863 GTAGGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTC 928804 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | || ||| || || | | || | || |||| || || || || || |||||| Sbjct 928803 TGGAACTTGAACTTCAGCTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGA 928744 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA-- 40084 || ||||| || || || | | ||| ||| | |||||| ||||| || | Sbjct 928743 TGCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCAT----TGTCATTTAACT 928688 Query 40085 -----TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACG 40139 |||||||||| | || || | || | ||| ||||| |||||||| || | Sbjct 928687 TGTCCTTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAG 928628 Query 40140 CCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAA 40197 |||| || ||||||||||| | ||| || || ||||| |||||||| | |||||| Sbjct 928627 CCTCAGCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908722722760