Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 242 3e-59 >seq3 Length=1410883 Score = 242 bits (268), Expect = 3e-59 Identities = 595/885 (67%), Gaps = 23/885 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| |||||||||| |||||| || || |||||||||||||||||||| |||| Sbjct 928570 TTTGTTTTGTTTCCAATCAGATATCACGAAATCTGGCAAATGTACAAAAAAGCTGAGGCT 928629 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA-CATTGGATTG--CA 43816 ||||||||||| || || ||| |||| ||| ||| ||||| ||| | |||| | | Sbjct 928630 TCATTTTGGACTGCTGAGGAAATTGACTTGGGTAAGGACTT-GCATGACTGGAAGGACAA 928688 Query 43817 TTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 | ||| |||| |||| ||| || || | || || || |||||||| || Sbjct 928689 GTTAAATGACAATGAAAGGTTTTTCATTTCAAGAATCTTAGCTTTCTTTGCTGCATCTGA 928748 Query 43876 CGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 || || ||||| || || |||||| || | | || ||||||||| | ||||||| Sbjct 928749 TGGTATTGTCAACGAGAACTTGGTTGAGAATTTCTCAGC-TGAAGTTCAAGTTCCAGAAG 928807 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | ||| |||||||| |||||||| || || ||||| || || |||| ||| | Sbjct 928808 CCAAATGCTTTTATGGATTTCAAATCATGATGGAGAATATCCACTCAGAAACCTACTCTT 928867 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAATGCGAT 44052 | |||| ||||| || ||||| ||| || ||| || | ||||||||||| || Sbjct 928868 TATTGATTGATACCTATATCAAGGAT--CCAAAAGAGGCTGACTTTTTGTTTAATGCAAT 928925 Query 44053 AGA-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA---ATT 44108 || |||| | | || || || | || || |||||||| | | |||||| | || Sbjct 928926 TGACAACATTCCATG-TATCAAGAAGAAGGCTGACTGGGCTTTGAGATGGATCAACGATG 928984 Query 44109 CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 | ||| | || || ||||| ||||| || || || | ||| || || |||||||| Sbjct 928985 AAGATGCATTATTCGGTGAACGTCTTGTTGCTTTCGCTGCTGTTGAGGGTATTTTCTTCA 929044 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 || || ||||| | || || ||||| ||||| ||||| ||||||| || | || | Sbjct 929045 GTGGTTCATTTGCATCTATCTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTCTTACAT 929104 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || || || || || | | |||||||| |||||| || ||||||||||| || Sbjct 929105 TCTCTAACGAATTGATTTGCAGAGATGAAGGTTTACATACTGACTTTGCTTGCTTATTGT 929164 Query 44289 TTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAAT-TACAGA-TATTGTTGTAGA 44346 | || | | || || | ||| ||| | | | ||| ||| | || Sbjct 929165 TCTCTCATTTGCAAAAC----AGACCAGATG-CAGAAATTGTTGAGAGGATTATCACCGA 929219 Query 44347 GGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAAT 44406 || || | || ||| | |||||| | || ||||||||||| ||| | || || Sbjct 929220 AGCCGTTACCATTGAAAAGGAATTTTTCACCGATGCATTACCTGTCTCTTTGTTGGGTAT 929279 Query 44407 GAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 |||| |||||| |||||| | |||| |||||||| | ||| | | | | Sbjct 929280 GAATAGCAGCTTGATGTGTCAATATGTCGAATTTGTTGCAGATAGATTATTAGTTGCTTT 929339 Query 44467 GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTT 44526 |||| ||| || || | ||| ||| || |||||||| |||||||| || || || Sbjct 929340 GGGTAACGAAAAGGTGTACAATGTTACAAATCCTTTTGATTTCATGGAAAACATCTCCTT 929399 Query 44527 GGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 || || ||||| |||||||||||||| | || | || ||||| Sbjct 929400 GGCTGGTAAAACCAACTTTTTTGAAAAGAGAGTCAGTGACTATCA 929444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455956404045