Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 288 1e-72 seq5 93.3 5e-14 >seq3 Length=1410883 Score = 288 bits (318), Expect = 1e-72 Identities = 905/1377 (66%), Gaps = 39/1377 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 |||||| || |||||||| || | ||||||| ||||||||| | |||||||| Sbjct 803003 GTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTCGAAGTGTATGG 802944 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 ||||||||||| || || || || ||||| | |||||| || || ||||| || || | Sbjct 802943 CTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGAGCAAC 802884 Query 110788 CA--AAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGT 110843 | || || ||| | | ||| | || ||| ||| || ||| | ||||||| Sbjct 802883 AAGCAATGA--GTTTCTCAAACCATGCT--TTGCCATGTTTTGCTTCAATGTGTCCCAGT 802828 Query 110844 CGTAGT-TGAGCTTGGTTTCACCTTCCCACATGTCAAACTG-AAGCACCCCTTGGGACGC 110901 | | | | | || || | ||||||| |||| |||| ||| ||||| | | || Sbjct 802827 CCCACAATTCGGTAGGCTTT-CTGTCCCACAAGTCATACTGCAAGAGACCCTTCG-ATGC 802770 Query 110902 GGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTC 110961 || || || || |||| || || | |||| | |||| ||||| ||| | ||||| Sbjct 802769 TGGGGAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCTC 802710 Query 110962 CAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGA 111021 || | | || || || || |||||||| || |||| ||| ||||||| | || Sbjct 802709 CACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAGA 802650 Query 111022 ATCAAATGCGTAGCGGCACAAA---ATAAATACATCCGCGAGACCTTGAACACCCAAACC 111078 ||| |||| | | | | |||| || || |||| || |||||||| ||||| | | | Sbjct 802649 ATCGAATG-GCAAC--CTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGC 802593 Query 111079 AATAGGTCTGTGTCGCATATTAGA-CT-TTCGCGCAGTCTC-AACGGGATAAAAATTTCT 111135 ||| |||||||||| ||| ||||| || || || ||| |||||||||| |||| | Sbjct 802592 AATTGGTCTGTGTCTCATGTTAGATCTCTTTGCT---TCTGGAACGGGATAATAATTACG 802536 Query 111136 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 111195 |||||||| || ||| | || || || || | || || |||||||||||| | Sbjct 802535 GTCAATGATTCTGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCAAA 802476 Query 111196 ATCA---AAAGTGCGAGTCTCTTCA---TTGACATACTTTGGAAGGGCGATTGATGCCAA 111249 || | | || ||| | ||| | |||| | || | || || |||||||| Sbjct 802475 ATTATACCAGGTTGAAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCCAA 802416 Query 111250 ATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGA 111309 || || ||||| |||||| | | | ||| || | ||| || ||| || ||||| Sbjct 802415 GTTACATACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGA 802356 Query 111310 ACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAG 111369 ||||| | |||||||||||||||||| |||||||||| || ||||| || || || Sbjct 802355 TGATTTAATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAG 802296 Query 111370 CATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGG 111428 |||| | || || || ||||| || || | | | ||||| | ||| ||| || | | Sbjct 802295 CATGAATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATAACTTCTGAGC 802236 Query 111429 CTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACT 111488 || | || | | | || || ||||| ||| ||| | |||| |||| Sbjct 802235 CTTG-ACGGTCTGTCTTCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACT 802177 Query 111489 CCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGAC 111548 | || || | ||| | | ||||| || | | || | || | || ||||| Sbjct 802176 CATCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTT 802117 Query 111549 CACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTC 111608 | || ||| || | |||||||| | || || ||||||| | || ||| | |||| Sbjct 802116 TATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTC 802057 Query 111609 TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCC 111667 | | ||||| | ||| || || || ||| |||| ||| || | ||||| Sbjct 802056 TGGCTCTGTTTTCTTCCTTACCGTGATT-CTTCCTAATGTCAACGAAATCAAAAATATCT 801998 Query 111668 GCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATT 111723 || |||||||| || | || | || | | || |||| | ||| |||||| Sbjct 801997 GCATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTG-TTTCCACCTTGATC 801939 Query 111724 TACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACC 111783 || || || |||||| |||||| ||||||| ||| ||||||||||| | || ||| Sbjct 801938 CACGTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACC 801879 Query 111784 ATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACC 111843 || || || ||| | | | | | || ||||||||||| |||||||| Sbjct 801878 GTTGGTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACC 801819 Query 111844 CCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGA 111903 ||||| | ||| || || |||||| | | | || |||||||||||| ||| || Sbjct 801818 ACCAGCACTCTTGGAAATCAAAGCACACGTCTTCAACGTGTCATAGATACCGTCGATGGA 801759 Query 111904 GTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATT 111963 ||| ||||| |||| | | |||||| ||||| || ||| ||||||||||||||| Sbjct 801758 GTCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATT 801699 Query 111964 GAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTC 112020 ||| | |||||| | || || |||| | ||| ||||| | | ||| ||||| Sbjct 801698 GAACAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTAATTGTAAGTCTC 801642 Score = 104 bits (114), Expect = 3e-17 Identities = 339/515 (66%), Gaps = 29/515 (6%) Strand=Plus/Minus Query 122676 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTT 122735 ||| ||||||| | |||| | ||| || ||||| ||||||||||| | ||| | ||| Sbjct 929136 ACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCATCATACCTCTCTT 929077 Query 122736 CTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAA 122794 ||||||||| | |||| ||| ||||| || |||||| |||||||| ||| || | Sbjct 929076 CTTCAACCAGAAGATAGATGCA-AATGAACCACTGAAGAAAATACCCTCAACAGCAGCGA 929018 Query 122795 ACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC---AAACCATTTCATTGCCC 122851 | |||| ||| ||||| |||| | | | | |||| | |||| ||| |||| Sbjct 929017 AAGCAACAAGACGTTCACCGAATAA---TGCATCTTCATCGTTGATCCATCTCAAAGCCC 928961 Query 122852 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAA-----CTGCTT 122906 | | |||||||||| |||||||| | | | || || | ||| || | || | Sbjct 928960 AGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAAAAGTCAGCCT 928901 Query 122907 CTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAAC 122966 |||| | |||||| || || | ||||||||| || || ||||| || | Sbjct 928900 CTTT-----TGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGAGTGGAT 928846 Query 122967 CAT-TTCATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCAT 123025 | | ||| || | |||| || | || || | ||||| | ||||| ||| Sbjct 928845 ATTCTCCATCAT-GATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAACTTCAG 928787 Query 123026 CCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCA 123085 | | ||||| | | | ||||| ||||| ||||| || |||||||||| || | Sbjct 928786 CTGAGAAATTCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAAAGCTA 928727 Query 123086 GGATGTACTT--TATGAATTTCTTTTCATTTTCATT---CAGGGTCTTCCAGTCGT-CAA 123139 || | ||| ||||| | ||||||| ||||| | | ||||||||| | ||| Sbjct 928726 AGA--TTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCCTTCCAGTCATGCAA 928669 Query 123140 GATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 123174 | || || ||| |||| ||| || ||||||||| Sbjct 928668 G-TCCTTACCCAAGTCAATTTCCTCAGCAGTCCAA 928635 >seq5 Length=1138348 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 164613 GTTGCACCACGATCCGGTCTCGCTGTGAAGCATGGTATTCAAGTTGGTGCGGGTGTTATT 164672 ||||| || ||||||| | ||||| ||||| || ||| | ||||| |||||||| Sbjct 373023 GTTGCTCCCAGATCCGGATTAGCTGTCAAGCACGGAATTTCAACCGGTGCCGGTGTTATC 372964 Query 164673 GATCCCGACTATACAGGTGAAGTCAAAGTCGTTCTCTTCAATCACGGAGACAAAGACTT 164731 ||| | ||||| | ||| || |||||||| ||||||||||||||| ||||| ||||| Sbjct 372963 GATGCTGACTACAGAGGGGAGGTCAAAGTTGTTCTCTTCAATCACTCCGACAAGGACTT 372905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031929346400