Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 170 2e-37 >seq3 Length=1410883 Score = 170 bits (188), Expect = 2e-37 Identities = 927/1467 (63%), Gaps = 39/1467 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||||||||||||||||| || ||||| || || ||||| | ||||| Sbjct 802963 TAGATGTTCGAAGTGTATGGCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGAC 802904 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTT 118299 || || ||||| || || | || | ||| | | ||| | ||| || ||| || Sbjct 802903 GCAGTAGGCATAGGAGCAACAAGCAATGAGTTTCTCAAACCATGCTTTGCC--ATGTTTT 802846 Query 118300 CCTTGAGAGCGTCCCAGTCGTA------GTTGAGCTTTGTCTCCCCCTGCCACATATCAA 118353 ||| | | ||||||||| | | | ||||| | |||| ||| ||| Sbjct 802845 GCTTCAATGTGTCCCAGTCCCACAATTCGGTAGGCTTTCTGTCCC------ACAAGTCAT 802792 Query 118354 ACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 |||| | || ||| | || ||||| || || || | ||||| |||| || || || | Sbjct 802791 ACTGCAAGAGACCCTTCGATGCTGGGGAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTT 802732 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 | ||||| || | ||||| | || | || || ||||| ||||| || || | Sbjct 802731 CTGCCAACTCAATGGATGCCTCCACAGCACCATGGTAGATTGTCTCAAAGATTTGAATGT 802672 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAA---ATAAATACATCCG 118530 ||| | || |||| || | ||||| || | | | |||| || || |||| | Sbjct 802671 TCAATTCCCTGGCTTCTTGAGAATCGAATGGCAACCT---CAAAGCCATGAAGGCATCGG 802615 Query 118531 CGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT 118590 | |||||||||||||||| ||||||| | |||||||| ||||| || || ||| Sbjct 802614 CTAGACCTTGGACACCGACAGCAATTGGTCTGTGTCTCATGTTAGATCTCTTTGC-TTCT 802556 Query 118591 -CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTG 118649 ||||||||| |||| | || || | || || | || ||||| | || | Sbjct 802555 GGAACGGGATAATAATTACGGTCAATGATTCTGTTCAAGTTACGAGTGACGGCTTTACTT 802496 Query 118650 ATTTCATGAAGCTTTTCGTAATCAAAAC---TGCGAGTCTCTTCA---TTGACATACTTA 118703 || || ||||| ||||| ||| | | | | ||| | ||| | |||| | | Sbjct 802495 ATATCGTGAAGTTTTTCAAAATTATACCAGGTTGAAGTAGCATCACTCTCGACAAATGCA 802436 Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || | || || || |||| ||||| |||| |||||| | ||| ||| || | | Sbjct 802435 GGCAAGGATATAGATGCCAAGTTACATACAGCAACCTCATCTGGAGCAGAGTATTCAACA 802376 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| || || ||||| | ||||| |||||||| || | ||| || Sbjct 802375 ATCTCGCAACACAAATTGGATGATTTAATAATACCCAAATTCTTTTGGTTAGTCTTCTTG 802316 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA 118883 ||||| ||||| || ||||||||| |||| || || ||||| ||||| | || | ||| Sbjct 802315 TTACATGCATCTTTATAAAGCATGAATGGAGTACCTGTCTCTGTTTGAGCCTCTAAGATA 802256 Query 118884 GCCTTCCA-GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTT 118942 || | ||| || || | ||| || || | | || ||| ||||| || Sbjct 802255 GCATACCATAACTTCTG-AGCCTTGACGGTCTGTCTTCCACGGTTTTCTCTTTCGTATTT 802197 Query 118943 TGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGG 119002 | ||| | |||| ||||| || || | || | | ||||| || | || || Sbjct 802196 TTCGTACAACTCTTCGAACTCATCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGG 802137 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 | | || | || ||||| | | ||| || | |||||||| | || |||||||| Sbjct 802136 GGAAAACAAAGTCCATTCTTTATTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCA 802077 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 | || | || | || | | |||||| | || ||||| | | || Sbjct 802076 CAAAGCTGGAAATAAGTCTCTGGCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTC 802017 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCT 119178 | || || | ||||| || ||||| ||||| | ||||| || | | ||| || Sbjct 802016 AACGAAATCAAAAATATCTGCATGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCT 801957 Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | ||| | || | || || | || ||| |||||| || |||| ||| |||| Sbjct 801956 TTTG-TTTCCACCTTGATCCACGTAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAA 801898 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAAT-ACGAGACTTATTGGCTCTGACATCG 119297 | ||||| | ||| || || || || ||| | || || | | | || Sbjct 801897 TAATACCGTTGGAGGTACCGTTGGTTCCGGCAATGTAGGCACCCGTT-GAACGAATATTA 801839 Query 119298 TGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTG 119357 |||||||||| ||||||||| || || | ||| || || || ||| | | | || Sbjct 801838 TGGATGTGCAAACCAATACCACCAGCACTCTTGGAAATCAAAGCACACGTCTTCAACGTG 801779 Query 119358 CCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGA 119417 | ||||| || ||||| ||||| |||| | || | | |||||| |||||||| Sbjct 801778 TCATAGATACCGTCGATGGAGTCTTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGT 801719 Query 119418 GGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGAC 119477 || ||||||||||| ||||| | ||||| | || || |||| | ||| ||| Sbjct 801718 GGTTGTGGTGTACCAGCATTGAACAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGAC 801659 Query 119478 ATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACC 119537 || | | ||| ||||| | || || || || || | |||||||| || | || Sbjct 801658 ATGTAATTGTAAGTCTCAATAACCCGTGGGATATCATCTCTATGAATACCAATAGCAACT 801599 Query 119538 CGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTC 119597 | ||||| || || ||| ||| | || | |||| || | | || | |||| Sbjct 801598 CTCATAATCAAGTGTTGAGGTCTCTCGGCAACCTTACCGTCAACCTTCAATAAGTAAGAT 801539 Query 119598 TTCTCCAAGGTCTTGAGACCAAAATAG 119624 |||| || ||||||| ||| || ||| Sbjct 801538 CTCTCTAACGTCTTGAAACCGAAGTAG 801512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435130426040