Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3 295 8e-75 seq2 93.3 5e-14 >seq3 Length=1410883 Score = 295 bits (326), Expect = 8e-75 Identities = 918/1401 (66%), Gaps = 35/1401 (2%) Strand=Plus/Plus Query 104229 ACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGA 104288 || || | ||| | || || || ||||||||| | || || || || | |||| Sbjct 801586 ACTTGATTATGAGAGTTGCTATTGGTATTCATAGAGATGATATCCCACGGGTTATTGAGA 801645 Query 104289 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 104348 | ||| | | ||||| ||| | |||| || || | |||||| | |||||||||| Sbjct 801646 CTTACAATTACATGTCTCAAAGATACTTCACACATGCTTCCCCAACCTTGTTCAATGCTG 801705 Query 104349 GTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCA 104408 |||||||| ||| |||||||| |||||| | | |||| ||||| ||||| ||| Sbjct 801706 GTACACCACAACCACAAATGTCTTCGTGCTTCTTGGTTGCCATGAAGGAAGACTCCATCG 801765 Query 104409 ACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTG 104468 |||||||||||| || | | | |||||| || || ||| | ||||| ||||||| Sbjct 801766 ACGGTATCTATGACACGTTGAAGACGTGTGCTTTGATTTCCAAGAGTGCTGGTGGTATTG 801825 Query 104469 GGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAAT 104528 | ||||||||||| || | | | | | ||| || || || ||| | Sbjct 801826 GTTTGCACATCCATAATATTCGTTCAACGGGTGCCTACATTGCCGGAACCAACGGTACCT 801885 Query 104529 CAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAG 104588 | | ||||||||||| ||| ||||||| |||||| |||||| || || || |||||| Sbjct 801886 CCAACGGTATTATTCCCATGGTTCGCGTCTTTAACAACACAGCTCGTTACGTGGATCAAG 801945 Query 104589 CTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATC 104644 ||| | |||| || | | || | || | || |||||||| || ||||| Sbjct 801946 GTGGAAA-CAAAAGACCTGGTGCCTTTGCTTTGTACATCGAACCATGGCATGCAGATATT 802004 Query 104645 ATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCC-GCGATCT 104703 | || ||| |||| | | || || ||| | || || | | ||| | || | Sbjct 802005 TTTGATTTCGTTGACATTAGGAAGAATCACGGTAAGGAAGAAAA-CAGAGCCAGAGACTT 802063 Query 104704 CTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTG 104763 || | ||| | ||||| || ||| | |||||||| ||||| ||| | | | | || Sbjct 802064 ATTTCCAGCTTTGTGGATCCCTGATTTGTTCATGAAAAGAGTAGAGCAAAATAAAGAATG 802123 Query 104764 GTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGA 104823 | || | |||| || | | || || || | | || | || || ||||| || Sbjct 802124 GACTTTGTTTTCCCCCAATGAAGCTCCAGGCTTGGCTGACAAATTCGGCGATGAGTTCGA 802183 Query 104824 AGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGA 104883 || | ||| ||| ||||| |||| || | | ||| || ||| | || Sbjct 802184 AGAGTTGTACGAAAAATACGAAAGAGAAAACCGTGGAAGACAGACCGTCAAGGCT-CAGA 802242 Query 104884 TGTG-TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACA 104942 || ||| | ||||| | || ||||||| ||||| ||||| |||| ||||||||| | Sbjct 802243 AGTTATGGTATGCTATCTTAGAGGCTCAAACAGAGACAGGTACTCCATTCATGCTTTATA 802302 Query 104943 AAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATC 105002 |||| || |||||| | |||| ||| ||||||||||||||| | || || |||||| Sbjct 802303 AAGATGCATGTAACAAGAAGACTAACCAAAAGAATTTGGGTATTATTAAATCATCCAATT 802362 Query 105003 TCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCAT 105062 | ||| || || | |||| | | ||||||| ||||| |||||| | |||| Sbjct 802363 TGTGTTGCGAGATTGTTGAATACTCTGCTCCAGATGAGGTTGCTGTATGTAACTTGGCAT 802422 Query 105063 CAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA------TTTGATTATGAAA 105116 | || | | || | ||| || || | | || | | ||| ||||| Sbjct 802423 CTATATCCTTGCCTGCATTTGTCGAGAGTGATGCTACTTCAACCTGGTATAATTTTGAAA 802482 Query 105117 AACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATT 105176 |||| ||||| | | ||| | ||||| ||| | |||||| | ||||| | |||| Sbjct 802483 AACTTCACGATATAAGTAAAGCCGTCACTCGTAACTTGAACAGAATCATTGACCGTAATT 802542 Query 105177 TTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGT 105235 ||| |||||| ||| || | |||||| ||||||||| | ||||||| | ||||| Sbjct 802543 ATTATCCCGTTCCAGAA-GCAAAGAGATCTAACATGAGACACAGACCAATTGCTGTCGGT 802601 Query 105236 GTTCAGGGTCTCGCGGATGTATTCATT-CTTTGTCGCCACGCATTTGATTCCGACGAAGC 105294 || || ||||| || |||| ||||| ||||| | | |||| ||||| | ||||| Sbjct 802602 GTCCAAGGTCTAGCCGATGCCTTCATGGCTTTGAGGTTGC-CATTCGATTCTCAAGAAGC 802660 Query 105295 GAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTC 105354 | |||| | || | || |||||||| || || || | ||| | ||||| | | Sbjct 802661 CAGGGAATTGAACATTCAAATCTTTGAGACAATCTACCATGGTGCTGTGGAGGCA--TCC 802718 Query 105355 A--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAA 105412 | ||||||||||| || || || |||| || |||| || || || ||||| || || Sbjct 802719 ATTGAGTTGGCAGAAGTCGAAGGGACATACGAGACCTACGAAGGCTCCCCAGCATC-GAA 802777 Query 105413 GGGGTGCTT-CAATTTGATATGTGGGAAGGTGAG---ACCAAGCTTCACTACGACTGGGA 105468 ||| ||| || | ||| ||||||| | || ||| | | | |||||||| Sbjct 802778 GGGTCTCTTGCAGTATGACTTGTGGGACAGAAAGCCTACCGAATT---GTGGGACTGGGA 802834 Query 105469 AGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 | | ||| || ||| ||| || | ||| | | ||| | || | ||||| Sbjct 802835 CACATTGAAGCAAAACATGGCAA--AGCATGGTTTGAGAAACTCATTGCTTGTTGCTCCT 802892 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 ||||| || || |||||| | ||||| || || || || ||||||||||| || ||||| Sbjct 802893 ATGCCTACTGCGTCCACCTCGCAAATTTTAGGCAACAACGAATGCTTTGAGCCATACACT 802952 Query 105587 ACGAACATCTATCTGAGAAGA 105607 |||||||||| ||||||| Sbjct 802953 TCGAACATCTACTCGAGAAGA 802973 >seq2 Length=1812747 Score = 93.3 bits (102), Expect = 5e-14 Identities = 219/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 |||||||||| |||||||| ||||||||| || | ||| ||| | || ||||| | Sbjct 194379 TATCAAAACCGTCCATCTCAACCAAAAGTTGATTCAAAGTGGTTTCTCTCTCGTCATTAG 194320 Query 9669 CTGGCATACCACCAGCACTGCGTT---------GCTTTCCCACGGCATCAATCTCATCAA 9719 | ||||| |||| | | || | || || | ||||| || ||||| | Sbjct 194319 C------ACCACTAGCATTTCCTTTGGAACGCTGTTTACCAATAGCATCGATTTCATCCA 194266 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGG 9779 || || ||| | || |||||| ||||| || ||| | ||| || ||||| | Sbjct 194265 CAAAAACAATGGAAGGGGCATTTTCTCGAGCAGTTTTAAACAAATCTCGAACACGAGAAG 194206 Query 9780 CGCCCACACCAACAAACATCTCCACAAAGTTTG-CGGCGGAACATTGGATGAAGGGGACA 9838 |||||||||||||||||||||| ||||| | | | | |||| | | || || ||| Sbjct 194205 CGCCCACACCAACAAACATCTCAACAAACTCGGACCCAGAAACAGAGTA-AAATGGAACA 194147 Query 9839 TTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCG 9898 | ||||| ||| | || || | | ||||||||| || |||||| || | Sbjct 194146 CCTGCCTCACCAGCAGTAGCCTTTGCTATCAAAGTCTTACCTGTTCCTGGCGGGCCAGAT 194087 Query 9899 AGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 | | ||||||| ||||||||| || ||| Sbjct 194086 AATATTGCACCTCTTGGAATCTTCGCACCA 194057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260734383160