Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq8 132 5e-26
seq3 118 1e-21
>seq8
Length=1028784
Score = 132 bits (146), Expect = 5e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || || || ||||||||| | || |||||||| |
Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| ||| || || || ||||| || ||||| |||||||||
Sbjct 326462 GACACTATTGACAATGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAG 326521
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | ||||| |||||||| ||| | || || | | | || | | ||||| |||
Sbjct 326522 CAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACAAT 326581
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| ||||||||||||||| | ||| | || |||
Sbjct 326582 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326614
Score = 129 bits (142), Expect = 7e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| | || || ||||||||||| | ||||| || ||
Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | || | ||| ||| || || || ||||| || ||||||||||||||
Sbjct 325549 TGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCA 325608
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | | ||||| |||||||| ||| | || || | | ||| | | ||||| ||
Sbjct 325609 GCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAA 325668
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
||||||||||||| ||| | ||| ||||||||
Sbjct 325669 CATCCAAAAGGAATCTACTTTACATTTAGTCTTG 325702
Score = 109 bits (120), Expect = 6e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || || ||||| ||||| | ||||| |||||
Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||| ||||||||| || ||||| || || || ||||||||
Sbjct 325778 GACACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 325837
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | ||||||| || ||||| ||| | || || | | || || | ||||| ||
Sbjct 325838 CAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACTACAAC 325897
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| ||||||||||||||| | ||| | || |||
Sbjct 325898 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 325930
Score = 105 bits (116), Expect = 8e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| | || || || || || ||| | || |||||||| |
Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| || | ||| ||| || || || ||||| || || || ||||||||
Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | | ||||| |||||||| ||| | || || | | || || ||||||| ||
Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAACATTATCAGACTACAAC 326125
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| ||||||||||| ||| | ||| | || |||
Sbjct 326126 ATTCAAAAGGAATCTACTTTACATTTGGTTTTG 326158
Score = 105 bits (116), Expect = 8e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| | ||||| || || || ||| | || |||||||| |
Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | || | ||| ||| || || || ||||| || || || ||||||||
Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | |||| ||||| ||||| ||| | || || | | ||| | | ||||| ||
Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| ||||||||||||||| | ||| | || |||
Sbjct 326354 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326386
>seq3
Length=1410883
Score = 118 bits (130), Expect = 1e-21
Identities = 154/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || || ||||| | || || ||||||||||| | ||||| || || |
Sbjct 317782 ATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCT 317723
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | |||||||| |||||||| || ||||| || || |||
Sbjct 317722 GACACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGATCAG 317663
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| | |||| || |||||||| || | || |||| | ||| | | ||||||||
Sbjct 317662 CAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACTATAAC 317603
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|||||||||| || || | ||| | ||||||
Sbjct 317602 ATCCAAAAGGAGTCTACCTTGCATTTGGTCTTG 317570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310335840080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |