Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8 132 5e-26 seq3 118 1e-21 >seq8 Length=1028784 Score = 132 bits (146), Expect = 5e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || || ||||||||| | || |||||||| | Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| ||| || || || ||||| || ||||| ||||||||| Sbjct 326462 GACACTATTGACAATGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACCAG 326521 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||| | || || | | | || | | ||||| ||| Sbjct 326522 CAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACAAT 326581 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||||||| | ||| | || ||| Sbjct 326582 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326614 Score = 129 bits (142), Expect = 7e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| | || || ||||||||||| | ||||| || || Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | ||| ||| || || || ||||| || |||||||||||||| Sbjct 325549 TGACACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCA 325608 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | ||||| |||||||| ||| | || || | | ||| | | ||||| || Sbjct 325609 GCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAA 325668 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||| | ||| |||||||| Sbjct 325669 CATCCAAAAGGAATCTACTTTACATTTAGTCTTG 325702 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||| ||||| | ||||| ||||| Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| ||||||||| || ||||| || || || |||||||| Sbjct 325778 GACACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAGACCAA 325837 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | ||||||| || ||||| ||| | || || | | || || | ||||| || Sbjct 325838 CAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACTACAAC 325897 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||||||| | ||| | || ||| Sbjct 325898 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 325930 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || || || || ||| | || |||||||| | Sbjct 325946 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACAATCACTTTGGAAGTTGAGTCCTCT 326005 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | ||| ||| || || || ||||| || || || |||||||| Sbjct 326006 GACACTATTGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326065 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||| | || || | | || || ||||||| || Sbjct 326066 CAAAGATTGATTTTCGCTGGTAAACAATTAGAAGACGGCAGAACATTATCAGACTACAAC 326125 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||| ||| | ||| | || ||| Sbjct 326126 ATTCAAAAGGAATCTACTTTACATTTGGTTTTG 326158 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| | ||||| || || || ||| | || |||||||| | Sbjct 326174 ATGCAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCT 326233 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| ||| || || || ||||| || || || |||||||| Sbjct 326234 GATACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAA 326293 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| ||||| ||||| ||| | || || | | ||| | | ||||| || Sbjct 326294 CAAAGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTACAAC 326353 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | ||||||||||||||| | ||| | || ||| Sbjct 326354 ATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326386 >seq3 Length=1410883 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||||||||| | ||||| || || | Sbjct 317782 ATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCT 317723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | |||||||| |||||||| || ||||| || || ||| Sbjct 317722 GACACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGATCAG 317663 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || |||||||| || | || |||| | ||| | | |||||||| Sbjct 317662 CAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACTATAAC 317603 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||| || || | ||| | |||||| Sbjct 317602 ATCCAAAAGGAGTCTACCTTGCATTTGGTCTTG 317570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310335840080