Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3 107 1e-18 seq8 102 6e-17 >seq3 Length=1410883 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||||||||| || || ||| | || || || |||||| | || |||||| | Sbjct 317785 AACATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCC 317726 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | ||||| ||||| |||||| ||||| |||||| |||| | Sbjct 317725 TCTGACACTATTGACAAT--GTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTG 317668 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||| | ||||| || || || ||||| ||||| || | | | |||||| || | Sbjct 317667 ATCAGCAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACT 317608 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| || ||||||||||| ||| | ||| | || || Sbjct 317607 ATAACATCCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGAGGTGG 317556 >seq8 Length=1028784 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || || ||| | ||||| |||||||| ||||||||||| Sbjct 326267 GATAAGGAAGGTATCCCACCAGACCAACAAAGATTAATCTTTGCCGGTAAACAATTGGAA 326326 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | ||||||||| |||||||| ||||| || |||||| |||||||||||| Sbjct 326327 GACGGAAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326386 Query 28003 CGTTTGCGTGGCGG 28016 | ||| | || || Sbjct 326387 AGATTGAGAGGTGG 326400 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| || || || ||| | || || || |||||| | || |||||| | | Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| ||||| || || || || |||||| |||| || Sbjct 325549 TGACACCATCGACAAC--GTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGAC 325606 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || ||||| || || ||||||||||| |||| | | | ||||||||| ||| Sbjct 325607 CAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 325666 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||||| ||||| || ||| | ||| | || || Sbjct 325667 AACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGG 325716 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | ||||| ||| |||||| | || || || | | Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| ||||| || || || || |||||| |||| || | Sbjct 326462 GACACTATTGACAAT--GTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACC 326519 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| ||||| || || ||||||||||| |||| | | ||||| || |||| Sbjct 326520 AGCAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACA 326579 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 | || ||||| || |||||| |||||||||||| Sbjct 326580 ATATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326614 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | ||||| || ||||| | || ||||| || Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| ||||| ||||| || || |||||| | || | Sbjct 325778 GAC-----ACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAG 325832 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||| | |||||||| ||||| |||||||| || |||| | | || || || | Sbjct 325833 ACCAACAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACT 325892 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| || |||||| |||||||||||| | ||| | || || Sbjct 325893 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 325944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862360966343