Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq3 107 1e-18
seq8 102 6e-17
>seq3
Length=1410883
Score = 107 bits (118), Expect = 1e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||||||||| || || ||| | || || || |||||| | || |||||| |
Sbjct 317785 AACATGCAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCC 317726
Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| | | ||||| ||||| |||||| ||||| |||||| |||| |
Sbjct 317725 TCTGACACTATTGACAAT--GTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTG 317668
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| |||||| | ||||| || || || ||||| ||||| || | | | |||||| || |
Sbjct 317667 ATCAGCAAAGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAACCTTGTCTGACT 317608
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
| ||||||||||| ||| || ||||||||||| ||| | ||| | || ||
Sbjct 317607 ATAACATCCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGAGGTGG 317556
>seq8
Length=1028784
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| | || || || ||| | ||||| |||||||| |||||||||||
Sbjct 326267 GATAAGGAAGGTATCCCACCAGACCAACAAAGATTAATCTTTGCCGGTAAACAATTGGAA 326326
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| | | | ||||||||| |||||||| ||||| || |||||| ||||||||||||
Sbjct 326327 GACGGAAGAACCTTGTCCGACTACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326386
Query 28003 CGTTTGCGTGGCGG 28016
| ||| | || ||
Sbjct 326387 AGATTGAGAGGTGG 326400
Score = 98.7 bits (108), Expect = 7e-16
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| || || || ||| | || || || |||||| | || |||||| | |
Sbjct 325489 AATGCAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTC 325548
Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| || |||| ||||| || || || || |||||| |||| ||
Sbjct 325549 TGACACCATCGACAAC--GTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGAC 325606
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||| | || ||||| || || ||||||||||| |||| | | | ||||||||| |||
Sbjct 325607 CAGCAAAGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAACCTTGTCCGACTAC 325666
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||||||| || ||||| ||||| || ||| | ||| | || ||
Sbjct 325667 AACATCCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGAGGTGG 325716
Score = 95.1 bits (104), Expect = 9e-15
Identities = 151/215 (70%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || || ||| | ||||| ||| |||||| | || || || | |
Sbjct 326402 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAAACTATTACTTTGGAAGTTGAGTCCTCT 326461
Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| | | ||||| ||||| || || || || |||||| |||| || |
Sbjct 326462 GACACTATTGACAAT--GTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCACCAGACC 326519
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||| |||| ||||| || || ||||||||||| |||| | | ||||| || ||||
Sbjct 326520 AGCAAAGGTTGATTTTCGCTGGTAAACAATTGGAAGACGGTAGAACATTGTCGGACTACA 326579
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
| || ||||| || |||||| ||||||||||||
Sbjct 326580 ATATTCAAAAGGAATCCACTTTACATTTGGTTTTG 326614
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/232 (68%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || || || ||| | ||||| || ||||| | || ||||| ||
Sbjct 325718 ATGCAAATCTTCGTCAAGACTTTGACTGGTAAGACCATTACCTTAGAGGTCGAGTCTTCC 325777
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||| ||||||| ||||| ||||| || || |||||| | || |
Sbjct 325778 GAC-----ACAATCGACAACGTCAAGAGTAAAATTCAAGATAAGGAAGGTATCCCACCAG 325832
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||| | |||||||| ||||| |||||||| || |||| | | || || || |
Sbjct 325833 ACCAACAAAGATTAATTTTCGCCGGTAAACAATTAGAAGACGGCAGAACATTATCTGACT 325892
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| ||||| || |||||| |||||||||||| | ||| | || ||
Sbjct 325893 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGAGGTGG 325944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355862360966343
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |