Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq8 158 3e-33
seq3 147 5e-30
seq5 91.5 4e-13
>seq8
Length=1028784
Score = 158 bits (174), Expect = 3e-33
Identities = 165/217 (76%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | || | ||| ||||| ||||||| ||||| |||| ||| ||||| ||
Sbjct 325705 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCC 325646
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | || || |||||||| || | || ||| ||||| || ||||||||||||||
Sbjct 325645 GTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTT 325586
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| ||| || ||||||||||| |||| ||| || || || || ||
Sbjct 325585 ATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 325526
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || || ||||| || | ||| | |||||||
Sbjct 325525 AGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575
||||||||| ||||| | |||||| || | ||| ||||| || ||||| | || || ||
Sbjct 326599 AGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTGTTTACC 326540
Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635
|||||| || | | ||| ||||| || |||||||||||||| ||||||||||| |||
Sbjct 326539 AGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTACTCTT 326480
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695
||| || || ||||| |||| || || || || || || || || || ||||||||
Sbjct 326479 GACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGT 326420
Query 225696 TTTTATGAACACTTGCAT 225713
|| | ||| | ||||||
Sbjct 326419 CTTGACGAAGATTTGCAT 326402
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | || | ||| ||||| ||||| | ||||| || | || ||||| ||
Sbjct 326161 TCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCC 326102
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||||| || || |||||||| || | || ||||||||| || || |||||||||||
Sbjct 326101 GTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 326042
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| ||| || || || ||||| |||| || || || || |||||
Sbjct 326041 ATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGAT 325982
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || |||||||| || | ||| | ||||||
Sbjct 325981 TGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946
Score = 132 bits (146), Expect = 1e-25
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | || | ||||||||| ||||| | ||||| |||| ||| ||||| ||
Sbjct 326389 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCC 326330
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||| | || || || || ||||| | || ||||||||| || || |||||||||||
Sbjct 326329 GTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 326270
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||||||||| ||| || ||||| || || || | || || || || |||||
Sbjct 326269 ATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGAT 326210
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || || |||||||| || | ||| | ||||||
Sbjct 326209 TGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174
Score = 129 bits (142), Expect = 1e-24
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| || | || | ||||||||| ||||| | ||||| || | || ||||| ||
Sbjct 325933 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCC 325874
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
||||||| || || || ||||| || | || ||||||||| || || |||||||||||
Sbjct 325873 GTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 325814
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
||||| || || ||| || ||||| ||||| || | || || ||||| || ||
Sbjct 325813 ATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAAT 325754
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || |||||||| || | ||| | ||||||
Sbjct 325753 GGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718
>seq3
Length=1410883
Score = 147 bits (162), Expect = 5e-30
Identities = 164/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557
||||| ||| | || | || || || ||||||| || || || | ||| ||||| ||
Sbjct 317567 TCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCC 317626
Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617
|||||| | ||| || ||||||||||| | || ||| || || || ||||||||||||||
Sbjct 317627 ATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTT 317686
Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677
|||||| || ||| ||| ||| || || ||||| |||| ||| || ||||| || ||
Sbjct 317687 GTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAAT 317746
Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||| || || ||||| || | ||| | |||||| ||
Sbjct 317747 AGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785
>seq5
Length=1138348
Score = 91.5 bits (100), Expect = 4e-13
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529
||| |||||||||||||| ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 784825 GAAAATTTGACCATCAGTGATAGAAATAACGTTAGTTGGAATATAAGCAGAGACATCACC 784766
Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574
|||| || || | ||| || ||||| || | || ||| ||||
Sbjct 784765 ACCTTGGGTCTCAATAACTGGCAAGGCAGTCAAGGAACCAGCACC 784721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192531062486246
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |