Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8 158 3e-33 seq3 147 5e-30 seq5 91.5 4e-13 >seq8 Length=1028784 Score = 158 bits (174), Expect = 3e-33 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || | ||| ||||| ||||||| ||||| |||| ||| ||||| || Sbjct 325705 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCC 325646 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || |||||||| || | || ||| ||||| || |||||||||||||| Sbjct 325645 GTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTT 325586 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || ||||||||||| |||| ||| || || || || || Sbjct 325585 ATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 325526 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || ||||| || | ||| | ||||||| Sbjct 325525 AGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225516 AGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCC 225575 ||||||||| ||||| | |||||| || | ||| ||||| || ||||| | || || || Sbjct 326599 AGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTGTTTACC 326540 Query 225576 AGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTT 225635 |||||| || | | ||| ||||| || |||||||||||||| ||||||||||| ||| Sbjct 326539 AGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTTACTCTT 326480 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || ||||| |||| || || || || || || || || || |||||||| Sbjct 326479 GACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGTCAAAGT 326420 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 326419 CTTGACGAAGATTTGCAT 326402 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||| ||||| ||||| | ||||| || | || ||||| || Sbjct 326161 TCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCC 326102 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || |||||||| || | || ||||||||| || || ||||||||||| Sbjct 326101 GTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 326042 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || || || ||||| |||| || || || || ||||| Sbjct 326041 ATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGAT 325982 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || |||||||| || | ||| | |||||| Sbjct 325981 TGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||||||||| ||||| | ||||| |||| ||| ||||| || Sbjct 326389 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTTCC 326330 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | || || || || ||||| | || ||||||||| || || ||||||||||| Sbjct 326329 GTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 326270 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||||| ||| || ||||| || || || | || || || || ||||| Sbjct 326269 ATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGAT 326210 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || |||||||| || | ||| | |||||| Sbjct 326209 TGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||||||||| ||||| | ||||| || | || ||||| || Sbjct 325933 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCC 325874 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || ||||| || | || ||||||||| || || ||||||||||| Sbjct 325873 GTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTT 325814 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || ||| || ||||| ||||| || | || || ||||| || || Sbjct 325813 ATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAAT 325754 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| || | ||| | |||||| Sbjct 325753 GGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 >seq3 Length=1410883 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || | || || || ||||||| || || || | ||| ||||| || Sbjct 317567 TCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCC 317626 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||| || ||||||||||| | || ||| || || || |||||||||||||| Sbjct 317627 ATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTT 317686 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || ||| ||| ||| || || ||||| |||| ||| || ||||| || || Sbjct 317687 GTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAAT 317746 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 317747 AGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 >seq5 Length=1138348 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 784825 GAAAATTTGACCATCAGTGATAGAAATAACGTTAGTTGGAATATAAGCAGAGACATCACC 784766 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| || || | ||| || ||||| || | || ||| |||| Sbjct 784765 ACCTTGGGTCTCAATAACTGGCAAGGCAGTCAAGGAACCAGCACC 784721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531062486246