Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3 262 3e-65 >seq3 Length=1410883 Score = 262 bits (290), Expect = 3e-65 Identities = 581/859 (68%), Gaps = 28/859 (3%) Strand=Plus/Minus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| |||||| || || || ||||| || | || || || |||||||| |||||||| Sbjct 929432 ACTCTCTTTTCAAAAAAGTTGGTTTTACCAGCCAAGGAGATGTTTTCCATGAAATCAAAA 929373 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTC---ACACTTTAGAGCTACAAGCAATCGGTCAGCT 4388 ||||| || | ||||| ||||| || | | ||| || | |||| || || Sbjct 929372 GGATTTGTAACATTGTACACCTTTTCGTTACCC---AAAGCAACTAATAATCTATCTGCA 929316 Query 4389 ACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGC 4448 |||||||| | ||| || | ||| | || || || || | || ||||||| Sbjct 929315 ACAAATTCGACATATTGACACATCAAGCTGCTATTCATACCCAACAAAGAGACAGGTAAT 929256 Query 4449 GCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTA 4508 || | || ||||| || | ||| || || |||||||| ||||| || | | | Sbjct 929255 GCATCGGTGAAAAATTCCTTTTCAATGGTAACGGCTTCGGTGATAATCCTCTCAACAATT 929196 Query 4509 TCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAA 4568 ||| | |||| | ||| || | |||||||| || ||||| ||| ||| ||| Sbjct 929195 TCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAATAAGCAAGCAAAGTCAGTATGTAAA 929136 Query 4569 CCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 ||||| ||||||| ||||| ||||||||| || || | || ||||| | ||||||||| Sbjct 929135 CCTTCATCTCTGCAAATCAATTCGTTAGAGAATGTAAGACCTGGCATCATACCTCTCTTC 929076 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || | ||| || |||| |||||||| ||| ||||| || || || || || || || Sbjct 929075 TTCAACCAGAAGATAGATGCAAATGAACCACTGAAGAAAATACCCTCAACAGCAGCGAAA 929016 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || || | || ||||| | ||| || || |||||| | || ||||||| | Sbjct 929015 GCAACAAGACGTTCACCGAATAATGCATCTTCATCGTTGATCCATCTCAAAGCCCAGTCA 928956 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT---TTA-CTTTTTTC 4804 || || ||||| | || ||||| ||| || || ||||| || | | | | ||| Sbjct 928955 GCCTTCTTCTTGATACATGGAATGTTGTCAATTGCATTAAACAAAAAGTCAGCCTCTTT- 928897 Query 4805 AAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTC 4864 ||| || | ||||| || || || | || || |||| || || ||||| || Sbjct 928896 ---TGGATCCTTGATATAGGTATCAATCAATAAAGAGTAGGTTTCTGAGTGGATATTCTC 928840 Query 4865 TATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC-GTTACAAA 4923 || || |||||||| ||||||||| | ||||||| ||||||||||| | | || Sbjct 928839 CATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGGAACTTGAACTTCAGCTGAGAA 928780 Query 4924 ATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA--C 4981 || | || || ||||| ||||| || ||||| ||| || ||||| || || || | | Sbjct 928779 AT-TCTCAACCAAGTTCTCGTTGACAATACCATCAGATGCAGCAAAGAAAGCTAAGATTC 928721 Query 4982 ATGAGATATAAAGTACTGTTC---GTCAGGCTTAAGTTTT--TTCCAGTGGGGCAAATCT 5036 ||| || ||| || ||| |||| |||| || | ||||||| |||| || Sbjct 928720 TTGAAATGAAAA--ACCTTTCATTGTCA--TTTAACTTGTCCTTCCAGTCATGCAAGTCC 928665 Query 5037 TTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGAC 5096 ||| || |||| ||| ||| |||||||||| || || || |||||||||||||| | Sbjct 928664 TTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCAGCTTTTTTGTACATTTGC 928605 Query 5097 CAAATATCAGGATA-CTGA 5114 || || || |||| |||| Sbjct 928604 CAGATTTCGTGATATCTGA 928586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049553157997