Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 315 1e-80 >seq3 Length=1410883 Score = 315 bits (348), Expect = 1e-80 Identities = 1188/1843 (64%), Gaps = 43/1843 (2%) Strand=Plus/Minus Query 76821 TAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTG 76880 ||||||||||| || || | ||| |||| |||||||||||||| |||| ||| Sbjct 803302 TAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAGGTCAACTTG 803243 Query 76881 GAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCT 76940 |||| || || ||||| || | |||||| ||| ||||||||||| | Sbjct 803242 CCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGATGAAAGCAGAT 803183 Query 76941 CTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACT 77000 || || || ||||| | || || |||||| | || ||||| | |||||| | | | Sbjct 803182 CTGTCGGCTGCCATGTCGATGATATGCTTTTGGGATATCTCCCACACGGTTTTGTACAAT 803123 Query 77001 TGTTTGATATCATCTGGAAGGTTTGTATT---TTGAATGGAACCACCATCTGATATAATT 77057 ||||||| |||||||||| ||| | ||| || ||||| || ||| || || Sbjct 803122 TGTTTGAGCTCATCTGGAATGTTGGGCAACGATTGGATCGAACCGTTATTTGAAATGATA 803063 Query 77058 GTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCT--AAGGAGATGAG 77115 |||| || |||| || ||||| || || || ||| || || || | | Sbjct 803062 TTATTTTTCATATTGTCGTTCCA-AAGACCCAAATTGACCAAATCCTTCAACAAG-TATG 803005 Query 77116 GATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATG 77175 | || |||||||| || || |||| ||||||||| | | ||| || || || |||| Sbjct 803004 GGTTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTCGAAGTGTATG 802945 Query 77176 GTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCA 77235 | || | |||| ||||| || |||||||| | || || ||||| |||||||| || | Sbjct 802944 GCTCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGAGCAA 802885 Query 77236 CCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA-TCC 77294 | | || ||||| | |||||| || || || | || | || | ||| | ||| Sbjct 802884 CAAGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCA-ATGTGTCCCAGTCC 802826 Query 77295 CAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATAT 77354 || | || | ||| ||||| | || || || | | || || || Sbjct 802825 CACAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTCGATGCTGGG 802766 Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 || || | || || || || | ||||| ||| || | ||| || |||| Sbjct 802765 GAGCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCTCCACA 802706 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || || | || ||||| || || || | | || | || ||||| | ||| Sbjct 802705 GCACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAGAATCG 802646 Query 77475 AACGGATAATGTAAAAGA-ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 || || || | |||| || |||||||| |||| || || || || | | |||| || Sbjct 802645 AATGGC-AACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGG 802587 Query 77534 TCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAAT 77593 ||| |||||| | || || | || |||||||||| |||||||||||| ||| || || Sbjct 802586 TCTGTGTCTCATGTTAGATCTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGAT 802527 Query 77594 TTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATC- 77652 | | || | || | | || ||||| | || | ||||| ||||| | | | Sbjct 802526 TCTGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCAAAATTATACCA 802467 Query 77653 --------TTCCATCTATA---ACAAA--CATGTTCAAAGCTATAGATGCTAGATTACAA 77699 | |||| | ||||| || | ||| | ||||||||| | ||||| Sbjct 802466 GGTTGAAGTAGCATCACTCTCGACAAATGCAGG--CAAGGATATAGATGCCAAGTTACAT 802409 Query 77700 ACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTG 77759 || || ||||||| | | |||| | |||||| ||| | ||| |||| Sbjct 802408 ACAGCAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTA 802349 Query 77760 ATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAAC 77819 ||| | |||| ||| | |||||| |||| || || |||| || |||||||| || || Sbjct 802348 ATAATACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAAT 802289 Query 77820 GGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTA 77877 ||||| || || || | || | || | |||| | ||| | ||| || ||| || | Sbjct 802288 GGAGTACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATA--ACTTCTGAGCCTTGA 802231 Query 77878 TCATAGATTTGTAT----CGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCA 77933 | | ||| | || | |||||||| |||| || | | ||| || ||| Sbjct 802230 C----GGTCTGTCTTCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCA 802175 Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || || | ||| |||| || || |||||| ||| | | ||| | ||| || | Sbjct 802174 TCGCCGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTA 802115 Query 77994 TCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 78053 | || || |||| |||||| || | |||||| ||||| | ||| ||||| |||| | Sbjct 802114 TTTTGCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTG 802055 Query 78054 GTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAA 78113 | ||| | |||||| || || |||||| ||| || | || || | |||||| | | Sbjct 802054 GCTCTGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCA 801995 Query 78114 TGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATA 78173 ||||||||||| | || | || | | ||||||| ||| || || || ||||| | Sbjct 801994 TGCCATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACG 801935 Query 78174 TATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTT 78233 || | || ||||| ||| | || | | ||| |||||||||||||| || || || || Sbjct 801934 TAACGAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTG 801875 Query 78234 GTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCT 78293 ||||| | ||| || || ||| ||||||||| ||| | || || || || Sbjct 801874 GTTCCGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCA 801815 Query 78294 GCCATCTTAGATATTAGAGCGCAACGT-TTCAATGTATCGTAGATACCCTCTATACTGTC 78352 || |||| || || | ||| | |||| ||||| || || |||||||| || || ||| Sbjct 801814 GCACTCTTGGAAATCAAAGCAC-ACGTCTTCAACGTGTCATAGATACCGTCGATGGAGTC 801756 Query 78353 ATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAA 78412 ||| ||||| || | || || ||||||||| | || || || ||||| || Sbjct 801755 TTCCTTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAA 801696 Query 78413 TAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAG 78471 || || || || ||||| || || || ||| ||| | ||| |||||| || |||||| Sbjct 801695 CAAGGTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAA 801637 Query 78472 CTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTC 78531 | | || || | |||||| || | || || | ||| | || || ||||||| Sbjct 801636 CCCGTGGGATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTC 801577 Query 78532 TTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAA 78591 | || | |||| | | ||||| ||||| ||| | || || || || ||||| | Sbjct 801576 TCTCGGCAACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGA 801517 Query 78592 AATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 | |||||||| ||||| | ||| ||| |||| |||| || Sbjct 801516 AGTAGTTGTAGTTGAAGTCGCGATCGAAAACAATAGCAGAGTT 801474 Score = 226 bits (250), Expect = 4e-54 Identities = 589/893 (66%), Gaps = 10/893 (1%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||| ||||| |||||||| |||| || | || || ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCC 47956 ||| || || |||||||| |||||||| ||||| |||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 47957 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATT 48016 || | | | |||||||||||| ||||| | |||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 48017 CATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGC 48076 ||| || | | || |||| || || || | ||| || | ||| || || || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 48077 ATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACAT 48136 || || ||| || |||| || |||| | |||||| |||| Sbjct 929220 TTCGGTGATAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAA 929161 Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 ||| || ||||| ||| ||| | |||||||||||| | ||| ||||||||||| ||||| Sbjct 929160 TAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGT 929101 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 ||||| ||||| | || | || || | ||| || || | || || || ||| || Sbjct 929100 AAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAA 929041 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA-ACTG--GCTTCGTT 48313 ||| || || || || || || || || ||| | || ||| | | || |||| | Sbjct 929040 GAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATC 928981 Query 48314 GTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGC 48373 || ||||| | ||||| |||||||||||||| | ||| || || | || || || Sbjct 928980 GTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGC 928921 Query 48374 ATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATA 48433 |||||| | ||||| || || ||| || | || ||||| || || | | || Sbjct 928920 ATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTA 928861 Query 48434 CATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGT 48493 |||| ||||| ||||| || || || |||||||| ||||| ||| | ||||||| Sbjct 928860 GGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGG 928801 Query 48494 GATCTGTACCTC--CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || || || | | ||| || ||| |||| ||||| || || || |||||| Sbjct 928800 AACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCAGAT 928743 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---A 48608 |||||||| || ||||| | | ||| ||| | |||| ||| | | | || Sbjct 928742 GCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCC 928683 Query 48609 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCT 48668 |||||||||| | || || | || | ||| ||||| ||||||||||| ||||| Sbjct 928682 TTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCA 928623 Query 48669 GCTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 |||||||| ||||| | ||| || || ||| |||||| || | |||||| Sbjct 928622 GCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668721849760